DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3542 and URN1

DIOPT Version :9

Sequence 1:NP_608738.1 Gene:CG3542 / 33513 FlyBaseID:FBgn0031492 Length:806 Species:Drosophila melanogaster
Sequence 2:NP_015478.1 Gene:URN1 / 856275 SGDID:S000006356 Length:465 Species:Saccharomyces cerevisiae


Alignment Length:505 Identity:99/505 - (19%)
Similarity:176/505 - (34%) Gaps:159/505 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 EWTEHKAPDGRPYYYNQNTKQSSWEKPEALMTPAELLHNQCPWKEYRSDT--------------- 104
            ||.|.|.|.|:.||||:|||||.||||. |...:.|..|....:..|..|               
Yeast     4 EWQEFKTPAGKKYYYNKNTKQSRWEKPN-LKKGSNLESNAKESQTERKPTFSLELVNGWHLIIYN 67

  Fly   105 -GKVYYHNVATKETCWEPPPEYVDMKAKAKAEEAAAAAKAVAAMTSSSLAGMVPPAA-------- 160
             |...|.|..:||           .|.....|:.:.....:.::....|..::..|.        
Yeast    68 DGTKLYFNDDSKE-----------FKNDISQEDDSRCRSLIESLDKEKLVLLIGVARGYTMREED 121

  Fly   161 LASILPAALPVAPRLPTPEIH-----------------------SPLTPS-----SNENSSSAMD 197
            :..||.:.        ..|||                       |||..|     |...|||.. 
Yeast   122 IDKILESC--------NEEIHLFKRNQDEVERKDEISEEAGDVKSPLQESHTGLVSGYGSSSGE- 177

  Fly   198 QAMAATLAAIEVPQQNAKKDDKSESAVVFKDKREAIESFKELLRDRNVPSNANWDQCVKIISKDP 262
                      |..:::.::|:::|..:|.:|    |....:|.|                |..| 
Yeast   178 ----------EDEEEDEEEDEENEEQIVNQD----ISIIDDLNR----------------IDTD- 211

  Fly   263 RYAAFKNLNERKQTFNAYKTQKIKDEREESRLKAKKAKEDLEQFLMSSDKMNSQMKYFRCEEVFA 327
                  :::||...|..:...|: |:.....|::||.:.|.:.:.:..|.:...:     .|.:.
Yeast   212 ------DIDERNIFFELFDRYKL-DKFSTWSLQSKKIENDPDFYKIRDDTVRESL-----FEEWC 264

  Fly   328 GTRTWTA-VPEPDRRDIYEDCIFNLAKREKEEARLLKKRNMKVLGELLESMTSINHATTWSEAQ- 390
            |.|:..| ..|.|..|..||           ::.:|:......|.:::.:..:|...|...:.: 
Yeast   265 GERSGNATAEESDSEDNSED-----------DSEVLEPTKYHYLAQIVANAGTIAPDTIPQDIRK 318

  Fly   391 --------VMLLDNVAFKNDVTLLGMDKEDALIVFEEHIRTLEKEEDEE------REREKK---- 437
                    ..:.:.:..|.|     .||..:.::|  :.:|.:.|:.:|      |:.|:.    
Yeast   319 QQKALYKAYKIKEYIPSKRD-----QDKFVSQLLF--YYKTFDLEQRKEIFCDCLRDHERDFTGA 376

  Fly   438 -RMKRQQRKNRDSFLALLDSLHEEGKLTSMSLWVE----LYPIISADLRF 482
             ...||.::..|.:..||.:..:...:..:.|.:|    :.||:..:.|:
Yeast   377 VESLRQDKELIDRWQTLLKAPADSSSIEDILLSIEHRCCVSPIVVTEPRY 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3542NP_608738.1 PRP40 54..634 CDD:227435 99/505 (20%)
WW 54..81 CDD:278809 17/25 (68%)
WW 95..122 CDD:278809 7/42 (17%)
FF 231..280 CDD:280090 8/48 (17%)
FF 445..500 CDD:280090 8/42 (19%)
URN1NP_015478.1 PRP40 2..>88 CDD:227435 30/95 (32%)
WW 5..30 CDD:395320 16/24 (67%)
FF 219..263 CDD:396424 9/49 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 49 1.000 Domainoid score I2960
eggNOG 1 0.900 - - E1_COG5104
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001909
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11864
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.000

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