DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3542 and PRP40

DIOPT Version :9

Sequence 1:NP_608738.1 Gene:CG3542 / 33513 FlyBaseID:FBgn0031492 Length:806 Species:Drosophila melanogaster
Sequence 2:NP_012913.3 Gene:PRP40 / 853857 SGDID:S000001495 Length:583 Species:Saccharomyces cerevisiae


Alignment Length:624 Identity:153/624 - (24%)
Similarity:275/624 - (44%) Gaps:119/624 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 WTEHKAPDGRPYYYNQNTKQSSWEKPEALMTPAELLHNQCPWKEYRSDTGKVYYHNVATKETCWE 120
            |.|.|...||.||||..||:|:||||:.|::..|||..:..||..::..|||||:|..|:||.|.
Yeast     4 WKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWT 68

  Fly   121 PPPEYVDMKAKAKAEEAAAAAK----AVAAMTSSSLAGMVPPAALASILPAALPVAPRLPTPEIH 181
            .|       |..|..|..|..|    :.|.:..:.:|                     |...|..
Yeast    69 IP-------AFEKKVEPIAEQKHDTVSHAQVNGNRIA---------------------LTAGEKQ 105

  Fly   182 SPLTPSSNENSSSAMDQAMAATLAAIEVPQQNAKKDDKSESAVVFKDKREAIESFKELLRDRNVP 246
            .|....:.|.|..|.:..:.           |.::          :.|.||.:.|..:|::..|.
Yeast   106 EPGRTINEEESQYANNSKLL-----------NVRR----------RTKEEAEKEFITMLKENQVD 149

  Fly   247 SNANWDQCV-KIISKDPRYAAFKNLNE----RKQTFNAYKTQKIKDEREESRLKAKKAKEDLEQF 306
            |..::.:.: ::.::||||..   :::    :|:.|..|.:.:..|:..:...:..|.||..::.
Yeast   150 STWSFSRIISELGTRDPRYWM---VDDDPLWKKEMFEKYLSNRSADQLLKEHNETSKFKEAFQKM 211

  Fly   307 LMSSDKMNSQMKYFRCEEVFAGTRTWTA--------------VPEPDRRDIYEDCIFNLAKREKE 357
            |.:    ||.:||:        ||..||              |.|..:|..::|.|..|...:||
Yeast   212 LQN----NSHIKYY--------TRWPTAKRLIADEPIYKHSVVNEKTKRQTFQDYIDTLIDTQKE 264

  Fly   358 EARLLKKRNMKVLGELLESMTSINHA---TTWSEAQVMLLDNVAFKNDVTLLG------MDKEDA 413
            ..:.||.:.:|.|.|.|..:.:.:.:   .||.:    ||::..|......:.      :..||.
Yeast   265 SKKKLKTQALKELREYLNGIITTSSSETFITWQQ----LLNHYVFDKSKRYMANRHFKVLTHEDV 325

  Fly   414 LIVFEEHIRTLEKEEDEEREREKKRMKRQQRKNRDSFLALLDSLHEEGKLTSMSLWVELYPIISA 478
            |..:.:.:.|:|.:...:....:.|...:.|..||:|.:||..:  ..|:.:.:.|.::||.|.:
Yeast   326 LNEYLKIVNTIENDLQNKLNELRLRNYTRDRIARDNFKSLLREV--PIKIKANTRWSDIYPHIKS 388

  Fly   479 DLRFSAMLGQSGSTPLDLFKFYVENLKARFHDEKKIIREILKEKAFVVQAKTSFE----DFATVV 539
            |.||..|||::||:.||||..:|:..:.....::.|.::.|.::.|......|.|    :...|:
Yeast   389 DPRFLHMLGRNGSSCLDLFLDFVDEQRMYIFAQRSIAQQTLIDQNFEWNDADSDEITKQNIEKVL 453

  Fly   540 CEDKRSASLDAGNVKLTYNSLLEKAEAIEKERMKEEVRRLRKLENEIKNE-WL---EANVSVAEP 600
            ..|::...:|..::.|..:.|:::    ..|:::::::..|::..:.|:. ||   .......:|
Yeast   454 ENDRKFDKVDKEDISLIVDGLIKQ----RNEKIQQKLQNERRILEQKKHYFWLLLQRTYTKTGKP 514

  Fly   601 YES-----AKKLVEHLEAFALYEKEIGVEKIWEDFVKES 634
            ..|     :|:|.|.||..||.:::....:|:|||..||
Yeast   515 KPSTWDLASKELGESLEYKALGDEDNIRRQIFEDFKPES 553

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3542NP_608738.1 PRP40 54..634 CDD:227435 151/622 (24%)
WW 54..81 CDD:278809 14/24 (58%)
WW 95..122 CDD:278809 12/26 (46%)
FF 231..280 CDD:280090 12/53 (23%)
FF 445..500 CDD:280090 22/54 (41%)
PRP40NP_012913.3 PRP40 1..583 CDD:227435 153/624 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157343204
Domainoid 1 1.000 41 1.000 Domainoid score I3242
eggNOG 1 0.900 - - E1_COG5104
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H81828
Inparanoid 1 1.050 149 1.000 Inparanoid score I1137
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55014
OrthoFinder 1 1.000 - - FOG0001909
OrthoInspector 1 1.000 - - oto100082
orthoMCL 1 0.900 - - OOG6_101966
Panther 1 1.100 - - LDO PTHR11864
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2925
SonicParanoid 1 1.000 - - X1440
TreeFam 00.000 Not matched by this tool.
1413.830

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