DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3542 and Prpf40b

DIOPT Version :9

Sequence 1:NP_608738.1 Gene:CG3542 / 33513 FlyBaseID:FBgn0031492 Length:806 Species:Drosophila melanogaster
Sequence 2:XP_006257426.1 Gene:Prpf40b / 363000 RGDID:1565411 Length:934 Species:Rattus norvegicus


Alignment Length:899 Identity:362/899 - (40%)
Similarity:507/899 - (56%) Gaps:139/899 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VPPSVGNGGAPP----GRGIGYTPPGAIVPQFPPPGFGAPPP--------PEL------------ 43
            :||.....|.||    ...|...|||.:.|..||  .|||||        |.:            
  Rat    74 LPPPFPPMGLPPMSQRPPAIPPMPPGILPPMLPP--MGAPPPLTQIPGMVPPMMPGMLMPAVPVT 136

  Fly    44 -AAAFGVMATSTE----------WTEHKAPDGRPYYYNQNTKQSSWEKPEALMTPAELLHNQCPW 97
             |.|.|....|:.          |:||.|||||.||||.:.|||.||||.||.:.||||.:||||
  Rat   137 AATAPGADTASSAVPGTGPPRALWSEHVAPDGRIYYYNADDKQSVWEKPSALKSKAELLLSQCPW 201

  Fly    98 KEYRSDTGKVYYHNVATKETCWEPPPEYVDMKAKAKAEEAAAAAKAVAAMTSSSLAGMVPPAALA 162
            |||:|||||.||:|..::|:.|..|.:..|::|..|.|.|...    ......:|....|.....
  Rat   202 KEYKSDTGKPYYYNNQSQESRWTRPKDLDDLEALVKQESAGKQ----QTQQLQTLQPQPPQPDPP 262

  Fly   163 SILPAALPVAPRLPTPEIHSPLTPSSNEN-----SSSAMDQAM-------AATLAAIEVPQQNAK 215
            .|.|..:||...|..||      |..:|:     ::..::|..       :::.....:||:..:
  Rat   263 PIPPGPIPVPMALLEPE------PGRSEDCDVLEAAQPLEQGFLQREEGPSSSTGQHRLPQEEEE 321

  Fly   216 -KDDKSESAVVFKDKREAIESFKELLRDRNVPSNANWDQCVKIISKDPRYAAFKNLNERKQTFNA 279
             |.:...|.:.:.::.:|.::|||||||:.|||||:|:|.:|::..||||:|...|:|:||.|||
  Rat   322 AKPEPERSGLSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNA 386

  Fly   280 YKTQKIKDEREESRLKAKKAKEDLEQFLMSSDKMNSQMKYFRCEEVFAGTRTWTAVPEPDRRDIY 344
            ||.|:.|:|:||:||:||:||:.|:.||...::|.|..:|.|.|:.|.....|..|||.||:::|
  Rat   387 YKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGDLEVWAVVPERDRKEVY 451

  Fly   345 EDCIFNLAKREKEEARLLKKRNMKVLGELLESMTSINHATTWSEAQVMLLDNVAFKNDVTLLGMD 409
            :|.:|.|||:|||:|:.|::||::.|..:|:.|:|:|..||||:||..|:||.:|..|..|..||
  Rat   452 DDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDQQLQNMD 516

  Fly   410 KEDALIVFEEHIRTLEKEEDEEREREKKRMKRQQRKNRDSFLALLDSLHEEGKLTSMSLWVELYP 474
            ||||||.||||||.||:||:|||||.:.|.:|||||||::|...||.|||.|:|.|||.|:||||
  Rat   517 KEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQLHSMSTWMELYP 581

  Fly   475 IISADLRFSAMLGQSGSTPLDLFKFYVENLKARFHDEKKIIREILKEKAFVVQAKTSFEDFATVV 539
            .:|.|:||:.||||.|||||||||||||.||||||||||||::|||::.|.|:..|:|||||.|:
  Rat   582 AVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTAFEDFAHVI 646

  Fly   540 CEDKRSASLDAGNVKLTYNSLLEKAEAIEKERMKEEVRRLRKLENEIKNEWLEANVSVAEPYESA 604
            ..|||:|:|||||:|||:|||||||||.|:||.|||.||:|:.|...:: .|...|...|...:.
  Rat   647 SFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRREAAFRS-MLRQAVPALELGTAW 710

  Fly   605 KKLVEHLEAFALYEKEIGVE----KIWEDFVKESEDA-CSHHHSRSRK--SKKNKKHKKR--VRS 660
            :::.|.....:.:| :|.:|    :::.:|::..|.. |.|.|::.||  .|..|.|:||  ..|
  Rat   711 EEVRERFVCDSAFE-QITLESERIRLFREFLQVLEQTECQHLHTKGRKHGRKGRKHHRKRSHTPS 774

  Fly   661 VSRSDIENEHIE-----VEKSKRRR---SKTRSHSLTSIGSIESEKLLKKKKKRKNKLRGSSCES 717
            |||...|::..|     :...||||   |::.|...:|:.|:||               |.:.  
  Rat   775 VSRQGSESDEEELPPPSLRPPKRRRRNPSESGSEPSSSLDSVES---------------GGAA-- 822

  Fly   718 DVPGIQSPGTQALLQNDSNSHSPAKKKKKEKRAKKDKRHNRHNRSGTPLSPAQSVESSGSRNE-- 780
             :.|..||.:..||.:|   |...|.||.:|:.||     |.::|.:|.|.....:.:|..:|  
  Rat   823 -LGGPGSPSSHLLLGSD---HGLRKTKKPKKKTKK-----RRHKSTSPDSETDPEDKAGKESEDR 878

  Fly   781 --------------------------------ELTLSDGELESKRAALLAQLSE 802
                                            |..||:||||.:|..||.||.:
  Rat   879 EQEQDREPRQAELPNRSPGFGIKKEKTGWDTSESELSEGELERRRRTLLQQLDD 932

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3542NP_608738.1 PRP40 54..634 CDD:227435 281/606 (46%)
WW 54..81 CDD:278809 17/36 (47%)
WW 95..122 CDD:278809 16/26 (62%)
FF 231..280 CDD:280090 27/48 (56%)
FF 445..500 CDD:280090 36/54 (67%)
Prpf40bXP_006257426.1 PRP40 146..>641 CDD:227435 238/504 (47%)
WW 160..185 CDD:278809 17/24 (71%)
WW 199..228 CDD:238122 17/28 (61%)
FF 338..387 CDD:280090 27/48 (56%)
P-loop_NTPase 460..>518 CDD:304359 27/57 (47%)
FF 552..607 CDD:280090 36/54 (67%)
FF 693..741 CDD:128718 8/49 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339130
Domainoid 1 1.000 182 1.000 Domainoid score I3373
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H81828
Inparanoid 1 1.050 617 1.000 Inparanoid score I855
OMA 1 1.010 - - QHG55014
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001909
OrthoInspector 1 1.000 - - otm46059
orthoMCL 1 0.900 - - OOG6_101966
Panther 1 1.100 - - O PTHR11864
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1440
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1211.900

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