DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3542 and prpf40a

DIOPT Version :9

Sequence 1:NP_608738.1 Gene:CG3542 / 33513 FlyBaseID:FBgn0031492 Length:806 Species:Drosophila melanogaster
Sequence 2:NP_938170.1 Gene:prpf40a / 321555 ZFINID:ZDB-GENE-030131-274 Length:851 Species:Danio rerio


Alignment Length:884 Identity:372/884 - (42%)
Similarity:512/884 - (57%) Gaps:127/884 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNVPPSVGNGGAPPGRGIGYTPPGAIVPQFPPPGFGAPP-----------------PPELAAAF- 47
            |.:||.   |..||  .:...|||.:.|..||  .||||                 ||.|.||. 
Zfish    14 MGMPPM---GQRPP--SLAPMPPGIMPPMMPP--MGAPPIGQMPAMMPPMMPGMMMPPRLPAASI 71

  Fly    48 ------GV--------------MATSTE------------WTEHKAPDGRPYYYNQNTKQSSWEK 80
                  ||              ..||||            |||||:.||:.||||..||||:|||
Zfish    72 QPTGPPGVSPVEAAAPAAPGTTSTTSTESSPDEQPKKKSVWTEHKSLDGKIYYYNTETKQSTWEK 136

  Fly    81 PEALMTPAELLHNQCPWKEYRSDTGKVYYHNVATKETCWEPPPEYVDMKAKAKAEE-------AA 138
            |:.|.:|||.:.::||||||:|||||.||:|..|||:.|..|.|..|::|..||||       |.
Zfish   137 PDELKSPAEQMLSKCPWKEYKSDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTADVVAP 201

  Fly   139 AAAKAVAAMTSSSLAGMVPPAALASIL--------PAALPVAPRLPTPEIHSPLTPSSNENSSSA 195
            ....|:.|...||:. :.|.|...:.:        |:.:|.    ...|:.|.:..:|.|.:.|.
Zfish   202 GTTPALTAQNESSVT-VAPVAETEATMATGTIEEQPSHVPA----QVAEVSSDVAVNSTEETPSV 261

  Fly   196 MDQAMAATLAAIEVPQQNAKKDDKSESA-VVFK--DKREAIESFKELLRDRNVPSNANWDQCVKI 257
            ..|           |..:..|:::.|.. .|:|  .|.||.::|||||:::.|.|||:|:|.:|:
Zfish   262 ETQ-----------PSNDVSKEERPELVKKVYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKL 315

  Fly   258 ISKDPRYAAFKNLNERKQTFNAYKTQKIKDEREESRLKAKKAKEDLEQFLMSSDKMNSQMKYFRC 322
            |..||||:|...|:|:||.|||||.|..|:|:||:|:|.|::||..::||.:.:||.|..:|.:.
Zfish   316 IINDPRYSALPKLSEKKQAFNAYKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKA 380

  Fly   323 EEVFAGTRTWTAVPEPDRRDIYEDCIFNLAKREKEEARLLKKRNMKVLGELLESMTSINHATTWS 387
            |::|.....|:.|||.||.:||||.:|.|||:|||:|:.|:|||.:.|..:|::|.::.:.||||
Zfish   381 EQMFGDQEVWSCVPERDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWS 445

  Fly   388 EAQVMLLDNVAFKNDVTLLGMDKEDALIVFEEHIRTLEKEEDEEREREKKRMKRQQRKNRDSFLA 452
            |||..||||..|..|..|..||||||||.||||||.|||||::|:::...|.:|:|||||:||..
Zfish   446 EAQQYLLDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEDEKQKTLLRERRRQRKNRESFQK 510

  Fly   453 LLDSLHEEGKLTSMSLWVELYPIISADLRFSAMLGQSGSTPLDLFKFYVENLKARFHDEKKIIRE 517
            .||.||:.|:|.|||.|:|:||.||||:|||.||||.|||||||||||||:||||:||||:||::
Zfish   511 FLDELHDHGQLHSMSAWMEMYPTISADIRFSNMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKD 575

  Fly   518 ILKEKAFVVQAKTSFEDFATVVCEDKRSASLDAGNVKLTYNSLLEKAEAIEKERMKEEVRRLRKL 582
            |||:|.|:|:..|.||||.:|:..|||:.:|||||:||.:|||||||||.|:||.|||.|::::.
Zfish   576 ILKDKGFLVEINTGFEDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRK 640

  Fly   583 ENEIKNEWLEANVSVAEP---YESAKKLVEHLEAFALYEKEIGVEKIWEDFVKESEDACSHHHSR 644
            |...|:...:|...: ||   :|..::......||.....|...::|::||:...|..|.||||:
Zfish   641 EAAFKSMLKQATPPL-EPEATWEGVRERFLKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSK 704

  Fly   645 SRK-SKKNKKHKKRVRSVSRSDIENEHIEVEKSKRRRSKTRSHSLTSIGSIESEKLLKKKKKRKN 708
            ::| |||:|||.:: ||.|||..|:|..|....|::||.::|.|..| .|.|||:..||.||.|.
Zfish   705 TKKHSKKSKKHHRK-RSRSRSGSESEEDEYHTKKKKRSTSKSPSEHS-SSGESERSYKKSKKHKK 767

  Fly   709 KLRGSSCESDVPGIQSPGTQALLQNDSNSHSPAKKKKKEKRAKKDKRHNRHNRSGTPLSPAQSV- 772
            |.:....:|..|             :|......|.::|:|..:.||...:........||.:.. 
Zfish   768 KGKKRRHKSGSP-------------ESEGERERKGREKDKDKENDKSRAKLRGESKQKSPKRKSA 819

  Fly   773 ------ESSGSRNEELTLSDGELESKRAALLAQLSEQLD 805
                  ::|||.     ||:||||.:|..||    ||||
Zfish   820 KEEGGWDTSGSE-----LSEGELEKRRRTLL----EQLD 849

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3542NP_608738.1 PRP40 54..634 CDD:227435 284/612 (46%)
WW 54..81 CDD:278809 19/38 (50%)
WW 95..122 CDD:278809 18/26 (69%)
FF 231..280 CDD:280090 26/48 (54%)
FF 445..500 CDD:280090 38/54 (70%)
prpf40aNP_938170.1 PRP40 110..>575 CDD:227435 232/480 (48%)
WW 112..139 CDD:238122 19/26 (73%)
WW 150..180 CDD:238122 19/29 (66%)
FF 289..338 CDD:280090 26/48 (54%)
FF 422..481 CDD:128718 33/58 (57%)
FF 506..558 CDD:280090 35/51 (69%)
FF 638..692 CDD:128718 12/54 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170578716
Domainoid 1 1.000 87 1.000 Domainoid score I8018
eggNOG 1 0.900 - - E1_COG5104
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 613 1.000 Inparanoid score I876
OMA 1 1.010 - - QHG55014
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001909
OrthoInspector 1 1.000 - - oto38637
orthoMCL 1 0.900 - - OOG6_101966
Panther 1 1.100 - - LDO PTHR11864
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2925
SonicParanoid 1 1.000 - - X1440
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.790

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