DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment okr and RAD54

DIOPT Version :9

Sequence 1:NP_476661.1 Gene:okr / 33507 FlyBaseID:FBgn0002989 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_011352.1 Gene:RAD54 / 852713 SGDID:S000003131 Length:898 Species:Saccharomyces cerevisiae


Alignment Length:889 Identity:346/889 - (38%)
Similarity:473/889 - (53%) Gaps:189/889 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 PLRPESRHSFTPP-----------------LLKKNKRSC--------------QQELEREQELDR 45
            |.|...:::..||                 |.|::...|              .|::...|...|
Yeast    39 PFRVPYKNTHIPPAAGRIATGSDNIVGGRSLRKRSATVCYSGLDINADEAEYNSQDISFSQLTKR 103

  Fly    46 RR--LGALRDASNTSELPLPIRFTANSEYELAIAKVLARKFKVPMDNYVPDYGGKRVLGVRRCIS 108
            |:  |.|.|.|.:.:.|. .|::|            |.|.|.||:..||..:.....||:::.|:
Yeast   104 RKDALSAQRLAKDPTRLS-HIQYT------------LRRSFTVPIKGYVQRHSLPLTLGMKKKIT 155

  Fly   109 --RRPLHDPMACNALVLFHPPAYTE---H------------------------------------ 132
              .||||||....|:||:.|....|   |                                    
Yeast   156 PEPRPLHDPTDEFAIVLYDPSVDGEMIVHDTSMDNKEEESKKMIKSTQEKDNINKEKNSQEERPT 220

  Fly   133 ERMGMDPTKVL---------------------------VHVVVDPLLSNILRPHQREGVRFMYEC 170
            :|:|..|..:.                           |.||:||.|:.||||||.|||||:|.|
Yeast   221 QRIGRHPALMTNGVRNKPLRELLGDSENSAENKKKFASVPVVIDPKLAKILRPHQVEGVRFLYRC 285

  Fly   171 VEG------------------------------------KRGNFNGCIMADEMGLGKTLQCVTLV 199
            |.|                                    .||.: ||||||||||||||||:.|:
Yeast   286 VTGLVMKDYLEAEAFNTSSEDPLKSDEKALTESQKTEQNNRGAY-GCIMADEMGLGKTLQCIALM 349

  Fly   200 WTLLRQGPECKPTINKAIVVSPSSLVKNWEKEFTKWLHGRLLCLPME--------GGTKENTIRA 256
            ||||||||:.|..|:|.|:|.|||||.||..|..||| |.....|:.        ||......:|
Yeast   350 WTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELIKWL-GPNTLTPLAVDGKKSSMGGGNTTVSQA 413

  Fly   257 LEQFSMTSAR-LGTPVLLISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKR 320
            :..::....| :..|||:|||||.|...:.|....||:::.||||||||.|:||:.||..:...|
Yeast   414 IHAWAQAQGRNIVKPVLIISYETLRRNVDQLKNCNVGLMLADEGHRLKNGDSLTFTALDSISCPR 478

  Fly   321 RVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEQERQRAIEKTQEL 385
            ||:||||||||||:||::|::|.||.:||:.|.|::|||:.||||::.|:|::|..:...:.|:|
Yeast   479 RVILSGTPIQNDLSEYFALLSFSNPGLLGSRAEFRKNFENPILRGRDADATDKEITKGEAQLQKL 543

  Fly   386 IGLVDQCIIRRTNQILTKYLPVKFEMVICAKLTAIQLELYTNFLKSDQVRRSLADCNEKASLTAL 450
            ..:|.:.||||||.||.||||.|:|.||...|..:|.|||...:||.:|::.:........|.| 
Yeast   544 STIVSKFIIRRTNDILAKYLPCKYEHVIFVNLKPLQNELYNKLIKSREVKKVVKGVGGSQPLRA- 607

  Fly   451 ADITTLKKICSHPDLIYEKLTAREKGFENSQNV-LPSNY-----KPKDLNPELSGKFMLLDFMLA 509
              |..|||:|:||:|:     ..|..|::..:: ||.:|     |.:|:..:.|.||.:|:..|.
Yeast   608 --IGILKKLCNHPNLL-----NFEDEFDDEDDLELPDDYNMPGSKARDVQTKYSAKFSILERFLH 665

  Fly   510 AIRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFML 574
            .|:.|.:||:||||||||||||.|::.|.:.|..|||||||||.||.|:||||||||...|:|:|
Yeast   666 KIKTESDDKIVLISNYTQTLDLIEKMCRYKHYSAVRLDGTMSINKRQKLVDRFNDPEGQEFIFLL 730

  Fly   575 SSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQT 639
            ||||||||:||||||||.:.|||||||.|:||:||||||||||.|:|||.:::|:|||||.|||:
Yeast   731 SSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQS 795

  Fly   640 HKKSLSSTIIDNNESAEKHFTRDDLKDLFTFDANILSDTHDKLKCKRC-VQNIQMKPPPEDT--D 701
            .|.||||.::|..|..|:.|:.|:|:.||..:.|.:.:||:...|||| .|..|:|..|...  |
Yeast   796 MKMSLSSCVVDAKEDVERLFSSDNLRQLFQKNENTICETHETYHCKRCNAQGKQLKRAPAMLYGD 860

  Fly   702 CTSHLSQWYHCSNN--RGLPDNILAQA--WMDCKCVSFVFHHRS 741
            .|:    |.|.:::  ....|::|...  :.|   :||.|.:.|
Yeast   861 ATT----WNHLNHDALEKTNDHLLKNEHHYND---ISFAFQYIS 897

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
okrNP_476661.1 SNF2_N 159..466 CDD:278600 154/351 (44%)
DEXDc 179..328 CDD:238005 78/157 (50%)
HELICc 493..622 CDD:238034 84/128 (66%)
RAD54NP_011352.1 Rad54_N 29..246 CDD:400820 43/219 (20%)
HepA <148..827 CDD:223627 299/688 (43%)
DEXHc_RAD54A 271..554 CDD:350825 126/284 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157343570
Domainoid 1 1.000 264 1.000 Domainoid score I298
eggNOG 1 0.900 - - E2759_KOG0390
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H48227
Inparanoid 1 1.050 569 1.000 Inparanoid score I153
Isobase 1 0.950 - 0 Normalized mean entropy S723
OMA 1 1.010 - - QHG58624
OrthoFinder 1 1.000 - - FOG0001533
OrthoInspector 1 1.000 - - oto99409
orthoMCL 1 0.900 - - OOG6_102456
Panther 1 1.100 - - LDO PTHR45629
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1064
SonicParanoid 1 1.000 - - X3107
TreeFam 1 0.960 - -
1615.740

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