DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment okr and EDA16

DIOPT Version :10

Sequence 1:NP_476661.1 Gene:okr / 33507 FlyBaseID:FBgn0002989 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_176309.2 Gene:EDA16 / 842407 AraportID:AT1G61140 Length:1280 Species:Arabidopsis thaliana


Alignment Length:812 Identity:150/812 - (18%)
Similarity:267/812 - (32%) Gaps:255/812 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 LDHMVTLLLVELHHCNKLSLPGQPTPPAPCLEHLLSENL---------------LDKLYEWGIKT 138
            |.|:.||.|..    ||.|  ||.......|.:|.:.:|               |.:|...|:.:
plant   216 LSHLTTLSLFS----NKFS--GQIPSSIGNLSNLTTLDLSNNNFSGQIPSFIGNLSQLTFLGLFS 274

  Fly   139 GRYANAV-----RLEQL-KLY--EQLVSHSRHQLLVHEPFLRPLLKLLASSQNEI---YPPDVEK 192
            ..:...:     .|.|| :||  :..:|.:...:|::    ...|.||:.|.|:.   .||::..
plant   275 NNFVGEIPSSFGNLNQLTRLYVDDNKLSGNFPNVLLN----LTGLSLLSLSNNKFTGTLPPNITS 335

  Fly   193 -------------------RLVILLNQLCVVLMQNVHLLDLFFFSTTQTQQSHHASNGGHTNFI- 237
                               ..:..:..|..:.:....|.....|....:..:.:..:.|:.||| 
plant   336 LSNLMDFDASDNAFTGTFPSFLFTIPSLTYIRLNGNQLKGTLEFGNISSPSNLYELDIGNNNFIG 400

  Fly   238 -----------IFSLLIPYVHREGSLGHQARDALLLCMALSQKNSNVGT-----YIATYSSICPV 286
                       :|.|.|.:::.:|.:.......|...:.|:..:.|..|     |..:|..  .:
plant   401 PIPSSISKLVKLFRLDISHLNTQGPVDFSIFSHLKSLLDLNISHLNTTTRIDLNYFLSYFK--RL 463

  Fly   287 LVTGLGGLYSRLPNQIEI-----KTVDWYRITTDDVTELPELTLFMNSLEFCNAVVQVAHTMIRQ 346
            |:..|.|.:....|:..:     :.:....::...:||.||.....:.|.|    :.:::..|:.
plant   464 LLLDLSGNHVSATNKSSVSDPPSQLIQSLYLSGCGITEFPEFVRTQHELGF----LDISNNKIKG 524

  Fly   347 QLLDFLYQGFLVPVLGPAILQTNVESQVSAMAYFDLI---VRSITEPGLIQIVIRFLLDEEKFDG 408
            |:.|:|::   :|:|....|..|.           ||   ..|..||.|:.:    |.....|.|
plant   525 QVPDWLWR---LPILYYVNLSNNT-----------LIGFQRPSKPEPSLLYL----LGSNNNFIG 571

  Fly   409 Q-----------RILDVLVERLNSNDSRLCMVTLSLFDSLLSLNCEDIMLELMLKYLLHCKHVPI 462
            :           ..||:.....|.:..| ||..|....|:|:|....:...|..:.....:.:.:
plant   572 KIPSFICGLRSLNTLDLSDNNFNGSIPR-CMGHLKSTLSVLNLRQNHLSGGLPKQIFEILRSLDV 635

  Fly   463 SHRYKINRVDPYTQAVEYFLNITPDIMKKVNSVLSINNGGLASN---GASSAAAGQPAVVATAKT 524
            .|...:.::   .:::.:|..:         .||::.:..:...   ..||....|..|      
plant   636 GHNQLVGKL---PRSLSFFSTL---------EVLNVESNRINDTFPFWLSSLPKLQVLV------ 682

  Fly   525 IGANWNHYGLNTTTGETLLANYQAYLLDARNRIVQCKHACDQWNNVY---RYQKLSKANFTGAPN 586
            :.:|..|..::..|...|             ||:...|  :::|...   .:.|.|..:..|...
plant   683 LRSNAFHGPIHEATFPEL-------------RIIDISH--NRFNGTLPTEYFVKWSAMSSLGKNE 732

  Fly   587 VAAN----GAGSSGQNSLV------------------------------NPEDVRALKQLDSL-- 615
            ..:|    |:|...|:|:|                              .|:.:..||:|..|  
plant   733 DQSNEKYMGSGLYYQDSMVLMNKGVAMELVRILTIYTAVDFSGNRFEGEIPKSIGLLKELLVLSL 797

  Fly   616 ----------QSIGDSSGYESLNVFSQTSNDLVAPGTMPQEPQLKQQQQRIDAWKVSSVREEPIG 670
                      .|:|:.:..|||:|   :.|.|.  |.:|||                      :|
plant   798 SNNAFSGHMPSSMGNLTALESLDV---SKNKLT--GEIPQE----------------------LG 835

  Fly   671 DLDLSEDLFAQGTVSLGPFLTAIWGKLQTFTSNCLYVNLHLTGLITHLTLFPLPLLHSILLRPDI 735
            ||    ...|....|.......:.|..|..|.||       :....:|.||...|       .::
plant   836 DL----SFLAYMNFSHNQLAGLVPGGQQFLTQNC-------SAFEDNLGLFGSSL-------EEV 882

  Fly   736 PTTSDTPSFHQVLKILKQQIDAELPDTDESLE 767
            .....||:.||         ..|.|:|:|..|
plant   883 CRDIHTPASHQ---------QFETPETEEEDE 905

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
okrNP_476661.1 Rad54_N <76..>126 CDD:430137 12/36 (33%)
HepA <156..650 CDD:440319 106/603 (18%)
DEXHc_RAD54A 156..396 CDD:350825 50/286 (17%)
EDA16NP_176309.2 HepA <547..1256 CDD:440319 84/451 (19%)
RING-HC_CHR27-like 984..1035 CDD:438504
Blue background indicates that the domain is not in the aligned region.

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