DRSC/TRiP Functional Genomics Resources

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Protein Alignment okr and smarca2

DIOPT Version :10

Sequence 1:NP_476661.1 Gene:okr / 33507 FlyBaseID:FBgn0002989 Length:784 Species:Drosophila melanogaster
Sequence 2:XP_031746549.1 Gene:smarca2 / 734002 XenbaseID:XB-GENE-1013843 Length:1606 Species:Xenopus tropicalis


Alignment Length:657 Identity:188/657 - (28%)
Similarity:301/657 - (45%) Gaps:93/657 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 LLSNILRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTINK 215
            |::..|:.:|.:|:.:|   |.....|.|| |:|||||||||:|.:.|:..|:    |.|.....
 Frog   735 LINGSLKHYQIQGLEWM---VSLFNNNLNG-ILADEMGLGKTIQTIALITYLM----EHKRLNGP 791

  Fly   216 AIVVSPSSLVKNWEKEFTKWLHGRLLCLPMEGGTKENTIRALEQFSMTSARLGT-PVLLISYETF 279
            .:::.|.|.:.||..||.||... ::.:..:|      ..|:.:..:...|.|. .|||.:||..
 Frog   792 YLIIVPLSTLSNWLYEFDKWAPS-VVKIAYKG------TPAMRRSLVPQLRTGKFNVLLTTYEYI 849

  Fly   280 ----RIYAEILCKYEVGMVICDEGHRLKNSD-------NLTYQALMGLKTKRRVLLSGTPIQNDL 333
                .|.|:|..||    :|.|||||:||..       |..|.|      .||:||:|||:||.|
 Frog   850 IKDKHILAKIRWKY----MIVDEGHRMKNHHCKLTQVLNTHYVA------PRRILLTGTPLQNKL 904

  Fly   334 TEYYSLVNFVNPEMLGTAAVFKRNFESAI-LRGQNTDSTEQERQRAIEKTQELIGLVDQCIIRRT 397
            .|.::|:||:.|.:..:.:.|::.|.:.. :.|:..|..|:|....|.:..:::   ...::||.
 Frog   905 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVL---RPFLLRRL 966

  Fly   398 NQILTKYLPVKFEMVICAKLTAIQLELYTNFLKSDQVRRSLADCNEK------ASLTALADITTL 456
            .:.:...||.|.|.||...::|:|..||.:......:   |.|.:||      .:.|.:..|..|
 Frog   967 KKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGIL---LTDGSEKDKKGKGGAKTLMNTIMQL 1028

  Fly   457 KKICSHPDLI--YEKLTAREKGFENSQNVLPSNYKPKDLNPELSGKFMLLDFMLAAIRAEGNDKV 519
            :|||:||.:.  .|:..|...|:.|.....|..|:       .||||.|||.:|..:||. |.:|
 Frog  1029 RKICNHPFIFQHIEESFAEHLGYSNGIINGPDLYR-------TSGKFELLDRILPKLRAT-NHRV 1085

  Fly   520 VLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLN 584
            :|....|..:.:.|.....|.:.::|||||...:.|:.::.|||:..|..|:|:||::|||.|||
 Frog  1086 LLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRASLLKRFNEEGSPFFIFLLSTRAGGLGLN 1150

  Fly   585 LIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTII 649
            |..|:.:.:||.||||..|.||..|..|.||:....:.||....|:|||||....:|.::...:|
 Frog  1151 LQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1215

  Fly   650 DNNESAEKHFTRDDLKDLFTFDANILSDTHDKLKCKRCV-QNIQMKPPPEDTDCTSHLSQWYHCS 713
            ......:|                  |.:|::....:.: ::.:.....:..|.:..:||.....
 Frog  1216 QAGMFDQK------------------SSSHERRAFLQAILEHEEQNESQKKDDLSGDISQEGASQ 1262

  Fly   714 NNRGLPDNILAQAWMDCKCVSFVFHHRSQAQEIVP---SAEEEATDQPEEKPESRKRSSTPA--- 772
            ....:||        |......:..|..:.:..:.   ....|....|..||...:....|:   
 Frog  1263 EEDEVPD--------DETLNQMIARHEEEFELFMRMDLDRRREDARNPNRKPRLMEEDDLPSWII 1319

  Fly   773 SDDSADE 779
            .||:..|
 Frog  1320 KDDAEVE 1326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
okrNP_476661.1 Rad54_N <76..>126 CDD:430137
HepA <156..650 CDD:440319 168/514 (33%)
DEXHc_RAD54A 156..396 CDD:350825 78/252 (31%)
smarca2XP_031746549.1 Atrophin-1 31..>467 CDD:460830
QLQ 175..209 CDD:462622
HSA 453..525 CDD:214727
BRK 605..648 CDD:462196
PLN03142 697..>1218 CDD:215601 170/521 (33%)
DEXHc_SMARCA2 717..967 CDD:350821 81/259 (31%)
SnAC 1293..1360 CDD:464219 8/34 (24%)
Bromo_SNF2L2 1416..1522 CDD:99947
Blue background indicates that the domain is not in the aligned region.

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