DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment okr and chd8

DIOPT Version :10

Sequence 1:NP_476661.1 Gene:okr / 33507 FlyBaseID:FBgn0002989 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_001334600.1 Gene:chd8 / 568214 ZFINID:ZDB-GENE-030131-6320 Length:2555 Species:Danio rerio


Alignment Length:830 Identity:216/830 - (26%)
Similarity:355/830 - (42%) Gaps:169/830 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 QELEREQELDRR------RLGALRDASNTSELPLPIRFTANSEYELAIAKVLARKFKVPMDNYVP 93
            ::|||::.:.::      :...:|:.....|.|.      |.:| :.:.::|.....|..||..|
Zfish   762 EQLERDKRIHQKLKRFKTKQAQMRNLFQEDEEPF------NPDY-VEVDRILDESHSVDKDNGEP 819

  Fly    94 ----------------------DYGGKRVLGVRRCISRRPLHDPMACNALVLFHPPAYTEHERMG 136
                                  |....:|...|:..||:|        .|.....||.:..::  
Zfish   820 VVYYLVKWCSLPYEDATWELKEDVDEGKVEEFRKIESRQP--------RLKRTPRPAASAWKK-- 874

  Fly   137 MDPTKVLVHVVVDPLLSNILRPHQREGVRFM----YECVEGKRGNFNGCIMADEMGLGKTLQCVT 197
            :|.:....:       .|.||.:|.|||.::    |        |...||:|||||||||:|.:.
Zfish   875 LDESTEYKN-------GNQLREYQLEGVNWLLFNWY--------NRQNCILADEMGLGKTIQSIA 924

  Fly   198 LVWTLLRQGPECKPTINKAIVVSPSSLVKNWEKEFTKW-------LHGRLLCLPMEGGTKENTIR 255
            |:..:...|.:     :..::::|.|.:.|||:||:.|       .||.|....|          
Zfish   925 LLSEMFSAGVQ-----SPFMIIAPLSTITNWEREFSNWTDMNAIVYHGSLASRQM---------- 974

  Fly   256 ALEQFSM---------TSARLGTPVLLISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQ 311
             ::|:.|         .........|:.::|........|.:.....|:.||.|||||.:.....
Zfish   975 -IQQYEMYCKDDKGHLIPGAYKFDALITTFEMILSDCPELREISWRCVVIDEAHRLKNRNCKLLD 1038

  Fly   312 ALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEQERQ 376
            :|..|:.:.:|||:|||:||.:.|.:||::|:.|....:...|.|.|...        .||    
Zfish  1039 SLKMLEIEHKVLLTGTPLQNTVEELFSLLHFLEPAQFPSEIEFLREFGDL--------KTE---- 1091

  Fly   377 RAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICAKLTAIQLELYTNFLKSDQVRRSLADC 441
               |:.|:|..::...::||..:.:.|.|..|.|.:|..:||.:|.:.|...|:.:....|:...
Zfish  1092 ---EQVQKLQSILKPMMLRRLKEDVEKNLAPKQETIIEVELTDVQKKYYRAILERNFSFLSMGAT 1153

  Fly   442 NEKASLTALADITTLKKICSHPDLIYEKLTAREKGFENSQNVLPSNYKPKDLNPEL--------S 498
            ........|..:..|:|.|:||.||   ..|.||.....:.|    |.|  |.|:.        :
Zfish  1154 QNSNVPNLLNTMMELRKCCNHPYLI---TGAEEKIVSELREV----YDP--LAPDFHLQALVRSA 1209

  Fly   499 GKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFN 563
            ||.:|||.:|..::| |..||::.|...:.||:.|.....::|.:.|:||.:....|...:|||:
Zfish  1210 GKLVLLDKLLPRLKA-GGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFS 1273

  Fly   564 DPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASG 628
            .|:||.|:|:|.::|||.|:||..|:...:||.||||.||.||.||..|.||.|...:|||:...
Zfish  1274 KPDSDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRN 1338

  Fly   629 SIEEKILQRQTHKKSLSSTIID----NNESAE---KHFTRDDLKDLFTFDA-NILSDTHDKLKCK 685
            |.|.::|.:.:.|..|...::.    |.||:.   :.|::.:::||....| ..:.|.:|: ..:
Zfish  1339 SYEREMLDKASLKLGLDRAVLQSMSGNKESSVNGIQQFSKKEIEDLLRKGAYAAIMDENDE-GSR 1402

  Fly   686 RCVQNIQMKPPPEDTDCT-------SHLSQ-WYHCSNNR---GLPDNILAQAWMDCKCVSFVFHH 739
            .|.::|........|..|       |..|: .:..|.||   .|.|....|.|            
Zfish  1403 FCEEDIDQILQRRATTITIESEGKGSTFSKASFVASENRTDIALDDPEFWQKW------------ 1455

  Fly   740 RSQAQEIVPSAEEEAT---DQPEEKPESRKRSST-----PASDDSADEDF 781
            ..:|...:.|...:.|   |.|..:.::|:.||.     ..||..:|:|:
Zfish  1456 AKKADIDMDSLNRKNTLVIDTPRVRKQTRQFSSLRGEGGDLSDLDSDDDY 1505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
okrNP_476661.1 Rad54_N <76..>126 CDD:430137 12/71 (17%)
HepA <156..650 CDD:440319 158/521 (30%)
DEXHc_RAD54A 156..396 CDD:350825 70/259 (27%)
chd8NP_001334600.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 522..653
CD1_tandem_CHD5-9_like 714..779 CDD:349315 3/16 (19%)
CD2_tandem_CHD5-9_like 797..855 CDD:349310 9/58 (16%)
PLN03142 886..>1487 CDD:215601 186/662 (28%)
DEXHc_CHD8 887..1108 CDD:350818 70/259 (27%)
DEAH box. /evidence=ECO:0000255|HAMAP-Rule:MF_03071 1024..1027 2/2 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1483..1525 7/23 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1758..1779
BRK <2333..2352 CDD:470653
BRK 2379..2422 CDD:462196
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2512..2555
Blue background indicates that the domain is not in the aligned region.

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