DRSC/TRiP Functional Genomics Resources

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Protein Alignment okr and chd1l

DIOPT Version :10

Sequence 1:NP_476661.1 Gene:okr / 33507 FlyBaseID:FBgn0002989 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_956607.1 Gene:chd1l / 393283 ZFINID:ZDB-GENE-040426-892 Length:1026 Species:Danio rerio


Alignment Length:627 Identity:187/627 - (29%)
Similarity:298/627 - (47%) Gaps:104/627 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 LRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLV----WTLLRQGPECKPTINKA 216
            |||:|.:||:::..|::    |..|||:.||||||||.|.::|:    .:|...||        .
Zfish    35 LRPYQLDGVKWLSLCMK----NQQGCILGDEMGLGKTCQTISLLAYARGSLKMNGP--------F 87

  Fly   217 IVVSPSSLVKNWEKEFTKWLHG-RLLCLPMEGGTKENTIRA-LEQFSMTSARLGTPVLLISYETF 279
            :|:.|.::::||.:|..::... .::|..   |.||.  || |:|...:..|.  .|||.:||..
Zfish    88 LVLCPLAVLENWRQELERFCPSLSVICYT---GDKEK--RAELQQNLKSDPRF--HVLLTTYEMC 145

  Fly   280 RIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVN 344
            ...|..|..::..:::.||.|||||.::|.:|.|.......||||:||||||:|.|.|||:.|:.
Zfish   146 LKDARYLKSWKWKILVVDEAHRLKNQESLLHQTLKEFTVGFRVLLTGTPIQNNLQEVYSLLTFIQ 210

  Fly   345 PEMLGTAAVFKRNFESAILRGQNTDSTEQERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKF 409
            |.:....||  .:|.:|.        .:.:.:.|:  ..||..::...::||....:...||.|.
Zfish   211 PSVFLPEAV--EDFVNAY--------ADIQTEPAL--VDELHQVLQPFLLRRVKAEVAAELPKKT 263

  Fly   410 EMVICAKLTAIQLELYTNFLKSDQVRRSLADC--NEKASLTALADI-TTLKKICSHPDLIYEKLT 471
            |:|:...|:|:|...|...|..|      .|.  .::::.|.|.:: ..|:|...||.|.     
Zfish   264 ELVVFHGLSALQKRYYKAILMRD------LDAFRTDQSTKTRLLNVLMQLRKCVDHPYLF----- 317

  Fly   472 AREKGFENSQNVLPSNYKPKDLNPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQLA 536
                     ..|.|..::..:...|.|||..|||.|||.:: ||...|:|.|..|:.||:.:...
Zfish   318 ---------DGVEPEPFEMGEHLVEASGKLSLLDSMLAYLQ-EGGHHVLLFSQMTRMLDILQDYL 372

  Fly   537 RKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPA 601
            ..|.|.:.||||::..::|:..:..|:  ..|.|:|:||:||||.|:||..|:.:...|.|:||.
Zfish   373 EYRGYSYERLDGSVRGEERNLAIKNFS--TKDVFIFLLSTKAGGVGMNLTAADTVIFVDGDFNPQ 435

  Fly   602 NDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNN-----ESAEKHFTR 661
            ||.||.||..|.||.:|..:.||:...:|||.|..|...|..|:.|:|:..     :.|:...:.
Zfish   436 NDLQAAARAHRIGQTRPVKVIRLLGRDTIEEIIYSRAVSKLRLTDTVIEEGRFSLLDQAQSAASG 500

  Fly   662 DDLKDLFTFDAN-ILSDTHDKLKCKRCVQNIQMKPPPEDTDC-----TSHLSQWY----HC---S 713
            ..|.::..|..: :||.....:               :|.|.     .|...||.    |.   .
Zfish   501 LQLSEILKFGVDKLLSSEESSV---------------QDVDLQLILGQSRDGQWLTDEEHAKLNE 550

  Fly   714 NNRGLPDNILAQAWMDCKCVSFVFHHRSQAQEIVPSAEEEAT 755
            :|....:::..|..|      :.|..:..:::  ||||:|.|
Zfish   551 SNEEEDEDMEGQNHM------YYFEGKDYSKD--PSAEDEKT 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
okrNP_476661.1 Rad54_N <76..>126 CDD:430137
HepA <156..650 CDD:440319 165/502 (33%)
DEXHc_RAD54A 156..396 CDD:350825 79/245 (32%)
chd1lNP_956607.1 PLN03142 35..>547 CDD:215601 177/580 (31%)
DEAH box 163..166 2/2 (100%)
Regulatory linker segment (RLS). /evidence=ECO:0000250|UniProtKB:Q86WJ1 594..628
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 606..655
Required for ATPase activity. /evidence=ECO:0000250|UniProtKB:Q86WJ1 608..666
Macro_Poa1p-like_SNF2 709..859 CDD:394880
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 877..929
BRCT 931..1016 CDD:469589
Blue background indicates that the domain is not in the aligned region.

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