DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment okr and Chd9

DIOPT Version :10

Sequence 1:NP_476661.1 Gene:okr / 33507 FlyBaseID:FBgn0002989 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_001297459.1 Gene:Chd9 / 109151 MGIID:1924001 Length:2885 Species:Mus musculus


Alignment Length:940 Identity:230/940 - (24%)
Similarity:392/940 - (41%) Gaps:239/940 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 RRSLAPSQRGPLRPESRHSFTPPLLKKNKRSCQQELERE--------QELDRRRLGALRDASNTS 58
            ||:.:..:.......|:|:|...  ...||...::::|:        ::.:....|:||...|::
Mouse   606 RRNESSDELSDAEQRSQHTFKEQ--HSQKRRSNRQIKRKKYAEDAEGKQSEEEVKGSLRVKRNSA 668

  Fly    59 ----ELPLPIRFTANSEYELAIA-KVLA----------------RKFKVPMDNY----------- 91
                |.||.:.....||.:.||. |:||                .:|.|...||           
Mouse   669 PPPGEQPLQLFVENPSEEDAAIVDKILACRTVKKEVSPGVMLDIEEFFVKYKNYSYLHCEWATEQ 733

  Fly    92 --VPDYGGKRVLGVRRCISRRPLHDPMACNALVLFHP----PAYTEHERM-------GMDPTKVL 143
              :.|   ||   :::.|.|..|......:.|.....    |.|.|.:|:       ..|..:.:
Mouse   734 QLLKD---KR---IQQKIKRFKLRQAQRAHFLADMEEEPFNPDYVEVDRILEVSFCEDKDTGESV 792

  Fly   144 VHVVV---------------------------------------DPLLSNI-------------- 155
            ::.:|                                       |...|||              
Mouse   793 IYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQLQASRPDTRHLDRPPSNIWKKIEQSREYKNGN 857

  Fly   156 -LRPHQREGVRFM----YECVEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLR---QGPECKPT 212
             ||.:|.||:.::    |        |...||:|||||||||:|.:|.::.:|.   :||     
Mouse   858 QLREYQLEGLNWLLFNWY--------NRRNCILADEMGLGKTIQSITFLYEILLTGIRGP----- 909

  Fly   213 INKAIVVSPSSLVKNWEKEFTKW-------LHGRLLCLPMEGGTKENTIRALEQFSMTSARLGTP 270
               .::::|.|.:.|||:||..|       .||.|:...|           ::|:.|........
Mouse   910 ---FLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQM-----------IQQYEMYFRDSQGR 960

  Fly   271 VLLISYETFRIYAEILCKYEVGM-------------VICDEGHRLKNSDNLTYQALMGLKTKRRV 322
            ::..:|.    :..|:..:|:.:             ||.||.|||||.:....:.|..:..:.:|
Mouse   961 IIRGAYR----FQAIITTFEMILGGCGELNAIDWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKV 1021

  Fly   323 LLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEQERQRAIEKTQELIG 387
            ||:|||:||.:.|.:||::|:.|....:.:.|.:.|...        .||       |:.|:|..
Mouse  1022 LLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDL--------KTE-------EQVQKLQA 1071

  Fly   388 LVDQCIIRRTNQILTKYLPVKFEMVICAKLTAIQLELYTNFLKSDQVRRSLADCNEKASLTALAD 452
            ::...::||..:.:.|.|..|.|.:|..:||.||.:.|...|:     ::.:..::.|..|.:.:
Mouse  1072 ILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILE-----KNFSFLSKGAGQTNVPN 1131

  Fly   453 ITT----LKKICSHPDLI---YEKLTAREKGFENSQNVLPSNYKPKDLNPELSGKFMLLDFMLAA 510
            :..    |:|.|:||.||   .||:...   |.::.|...|::..:.: .:.:||.:|:|.:|..
Mouse  1132 LVNTMMELRKCCNHPYLIKGAEEKILGE---FRDTYNPSASDFHLQAM-IQSAGKLVLIDKLLPK 1192

  Fly   511 IRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLS 575
            ::| |..||::.|...:.||:.|.....::|.:.|:||.:....|...:|||:.|:||.|:|:|.
Mouse  1193 MKA-GGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLC 1256

  Fly   576 SKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTH 640
            ::|||.|:||..|:...:||.||||.||.||.||..|.||.|...:||||...|.|.::..|.:.
Mouse  1257 TRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASL 1321

  Fly   641 KKSLSSTII------DNNESAEKHFTRDDLKDLFTFDA--NILSDTHDKLK-CKRCVQNIQMKPP 696
            |..|...::      |:|.|..:..::.:::||....|  .|:.:..:..| |:..:..|.::..
Mouse  1322 KLGLDKAVLQSMSGRDSNVSGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEEDIDQILLRRT 1386

  Fly   697 PEDT-----DCTSHLSQWYHCSNNR---GLPDNILAQAW-----MDCKCV----SFVF---HHRS 741
            ...|     ..::.....:..|.||   .|.|....|.|     :|...:    |.|.   ..|.
Mouse  1387 KTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAELDIDTISGRNSLVIDTPRIRK 1451

  Fly   742 QAQEIVPSAEE-----EATDQPEEKPESRK 766
            |.:....:.:|     ||..:.||||:.|:
Mouse  1452 QTRPFSATKDELAELSEAESEGEEKPKLRR 1481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
okrNP_476661.1 Rad54_N <76..>126 CDD:430137 15/79 (19%)
HepA <156..650 CDD:440319 156/533 (29%)
DEXHc_RAD54A 156..396 CDD:350825 70/266 (26%)
Chd9NP_001297459.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 173..195
KLF3_N 219..360 CDD:410554
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 242..263
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 283..347
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 479..677 14/72 (19%)
PTZ00121 <510..>765 CDD:173412 33/166 (20%)
CD1_tandem_CHD5-9_like 685..749 CDD:349315 15/69 (22%)
CD2_tandem_CHD5-9_like 769..827 CDD:349310 6/57 (11%)
PLN03142 858..>1479 CDD:215601 186/676 (28%)
DEXHc_CHD9 859..1080 CDD:350819 70/266 (26%)
LXXLL motif 1 867..871 0/3 (0%)
DEAH box 996..999 2/2 (100%)
LXXLL motif 2 1035..1039 1/3 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1460..1484 8/22 (36%)
LXXLL motif 3 2030..2034
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2046..2238
Binds A/T-rich DNA. /evidence=ECO:0000250 2331..2471
A.T hook-like 2428..2435
BRK 2472..2512 CDD:462196
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2473..2494
BRK 2546..2590 CDD:197800
LXXLL motif 4 2710..2714
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2724..2770
LXXLL motif 5 2782..2786
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2818..2885
Blue background indicates that the domain is not in the aligned region.

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