DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment okr and chd7

DIOPT Version :10

Sequence 1:NP_476661.1 Gene:okr / 33507 FlyBaseID:FBgn0002989 Length:784 Species:Drosophila melanogaster
Sequence 2:XP_002936158.2 Gene:chd7 / 100379668 XenbaseID:XB-GENE-877230 Length:2969 Species:Xenopus tropicalis


Alignment Length:570 Identity:171/570 - (30%)
Similarity:283/570 - (49%) Gaps:76/570 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   153 SNILRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTINKAI 217
            :|.||.:|.|||.::......||    .||:|||||||||:|.:|.::.:..:|..     ...:
 Frog   952 NNSLREYQLEGVNWLLFNWYNKR----NCILADEMGLGKTIQSITFLYEIYLKGIH-----GPFL 1007

  Fly   218 VVSPSSLVKNWEKEFTKW-------LHGRLLCLPMEGGTKENTIRALEQFSMTSARLGTPVLLIS 275
            |::|.|.:.|||:||..|       .||        ......||:..|.:      ...|...|.
 Frog  1008 VIAPLSTIPNWEREFRTWTELNVVVYHG--------SQASRKTIQLYEMY------FKDPQGKII 1058

  Fly   276 YETFRIYAEILCKYEVGM-------------VICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGT 327
            ...::.:| |:..:|:.:             |:.||.|||||.:....:.|..:..:.:|||:||
 Frog  1059 KGAYKFHA-IITTFEMILTDCPELRNIHWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGT 1122

  Fly   328 PIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEQERQRAIEKTQELIGLVDQC 392
            |:||.:.|.:||:||:.|:...:.:.|.:.|...        .||       |:.|:|.|::...
 Frog  1123 PLQNTVEELFSLLNFLEPDRFPSESNFMQEFGDL--------KTE-------EQVQKLQGILKPM 1172

  Fly   393 IIRRTNQILTKYLPVKFEMVICAKLTAIQLELYTNFLKSDQVRRSLADCNEKASLTALAD-ITTL 456
            ::||..:.:.|.|..|.|.:|..:||.||.:.|...|:.:....|.......|::..|.: :..|
 Frog  1173 MLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFAFLSKGGGGGHANVPNLLNTMMEL 1237

  Fly   457 KKICSHPDLI---YEKLTAREKGFENSQNVLPSNYKPKDLNPELSGKFMLLDFMLAAIRAEGNDK 518
            :|.|:||.||   .||:.   :.|..:.|..||:::.:.:. :.:||.:|:|.:|..::| |..:
 Frog  1238 RKCCNHPYLINGAEEKIL---EEFRETHNCDPSDFQLQAMT-QAAGKLVLIDKLLPKLKA-GGHR 1297

  Fly   519 VVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGL 583
            |::.|...:.||:.|....:|:|.:.|:||.:....|...:|||:.|:||.|:|:|.::|||.|:
 Frog  1298 VLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGI 1362

  Fly   584 NLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTI 648
            ||..|:...:||.||||.||.||.||..|.||.|...||||:...|.|.::..:.:.|..|...:
 Frog  1363 NLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAV 1427

  Fly   649 I------DNNESAEKHFTRDDLKDLFTFDA-NILSDTHDKLKCKRCVQNI 691
            :      ||..:..:..::.:::||....| ..|.|..|: ..|.|.::|
 Frog  1428 LQSMSGRDNATNGVQQLSKKEIEDLLRKGAYGALMDEEDE-GSKFCEEDI 1476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
okrNP_476661.1 Rad54_N <76..>126 CDD:430137
HepA <156..650 CDD:440319 159/523 (30%)
DEXHc_RAD54A 156..396 CDD:350825 72/259 (28%)
chd7XP_002936158.2 PAT1 <30..>183 CDD:401645
Med15 110..>545 CDD:312941
CD1_tandem_CHD5-9_like 783..848 CDD:349315
CD2_tandem_CHD5-9_like 866..923 CDD:349310
PLN03142 955..>1482 CDD:215601 170/567 (30%)
BRK 2550..2591 CDD:462196
BRK 2628..2671 CDD:462196
Blue background indicates that the domain is not in the aligned region.

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