DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Chd1 and CHD1

DIOPT Version :9

Sequence 1:NP_001245851.1 Gene:Chd1 / 33505 FlyBaseID:FBgn0250786 Length:1900 Species:Drosophila melanogaster
Sequence 2:NP_011091.1 Gene:CHD1 / 856911 SGDID:S000000966 Length:1468 Species:Saccharomyces cerevisiae


Alignment Length:1629 Identity:523/1629 - (32%)
Similarity:808/1629 - (49%) Gaps:343/1629 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 SDSDAEGPSDQRNQSINNANTSSSLPKPEQNEEEDNETEAGQQQPASDASADESSDSSANVSPTS 185
            :|||.|...|...||.....|:.      :::|::.|.|.|::    |:..||..:..       
Yeast    34 NDSDDEDDEDNIKQSRRKRMTTI------EDDEDEFEDEEGEE----DSGEDEDEEDF------- 81

  Fly   186 SSSSSEEEEEDYRPKRTRQARKPPTAAEKSKKAPAPKNKKKTWDSDESDESEDSDDEVSTAQKRK 250
                  ||::||.....:|.|..|.:..|||....||                     |.::|:.
Yeast    82 ------EEDDDYYGSPIKQNRSKPKSRTKSKSKSKPK---------------------SQSEKQS 119

  Fly   251 PAATTSRSKLAQQQQRRRVKPFSSEDSDDDDASKRCATRRKGAAVSYK-EASEDEATDSEDLLEF 314
            .....:|              ||:               |:...|:|. :.|:|:..:|||    
Yeast   120 TVKIPTR--------------FSN---------------RQNKTVNYNIDYSDDDLLESED---- 151

  Fly   315 EYDESQAAT-----TAATAEEEEKCETIERILAQRAGKRGCTGNQTTIYAIEENGFDPHAGFDEK 374
            :|...:|.:     .|:...:.|....|:.::..|.        :|::    |.|     ...||
Yeast   152 DYGSEEALSEENVHEASANPQPEDFHGIDIVINHRL--------KTSL----EEG-----KVLEK 199

  Fly   375 QTPD---AETEAQFLIKWKGWSYIHNTWESEATLRDMKAKGMKKLDNFIKK---EKEQAYWRRYA 433
            ..||   .:...:|||||...|::|||||:..::.  :.:|:|:|||:.|:   |.:|.....|.
Yeast   200 TVPDLNNCKENYEFLIKWTDESHLHNTWETYESIG--QVRGLKRLDNYCKQFIIEDQQVRLDPYV 262

  Fly   434 GPEDIDYFECQLELQHELLKSYNNVDRII-AKGSKPDDGTE--EYLCKWQSLPYAESTWEDAALV 495
            ..|||:..:.:.|.:.:..:.::..:||| ::.:..:|||.  :||.||:.|.|.|:|||:|..:
Yeast   263 TAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDI 327

  Fly   496 LRKWQRCAEQFNDRESSKCTPSRHCRVIKYRPKFSRIKNQPEFLSSGLTLRDYQMDGLNWLLHSW 560
            ::......:.|.:||:||..|.........||:|.::..||.|:..| .|||:|:.|:||:...|
Yeast   328 VKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFIKGG-ELRDFQLTGINWMAFLW 391

  Fly   561 CKENSVILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAPDMNVVTY 625
            .|.::.|||||||||||:||:.|:..|.......||.:.|||||||.||...|:.||||:|.:.|
Yeast   392 SKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICY 456

  Fly   626 LGDIKSRELIQQYEW----QFESSKRLKFNCILTTYEIVLKDKQFLGTLQWAALLVDEAHRLKND 686
            :|:.|||:.|::||:    :.:..|.:|||.:|||||.:|||:..||:::|..:.|||||||||.
Yeast   457 MGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNA 521

  Fly   687 DSLLYKSLKEFDTNHRLLITGTPLQNSLKELWALLHFIMPDKFDTWENFEVQHGNAEDKGYTR-L 750
            :|.||:||..|...:|:|||||||||::|||.||::|:||.:|...:..:.::.:.|.:.|.. |
Yeast   522 ESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDL 586

  Fly   751 HQQLEPYILRRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFDALRKGKRGSTSTFLNI 815
            |::::|:||||:|||||||||:|.|:|||||::.:|.:|||.|||||:.||..|.:|...:.|||
Yeast   587 HRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNI 651

  Fly   816 VIELKKCCNHAALIRPSEFELM------GLQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVLI 874
            :.||||..||..|...:|..::      .:.::..|:.|:..|||:||||:||.|||:.||||||
Yeast   652 MNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLI 716

  Fly   875 FSQMVRMLDVLADYLQKRHFPFQRLDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINLA 939
            |||||||||:|.|||..:...||||||::....||.::||||:..|.||.||||||||||||||.
Yeast   717 FSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLM 781

  Fly   940 TADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQR 1004
            |||||:|||||||||.||||.||||||||||.|.:||||:..:|||:::|||::||:|::.:|  
Yeast   782 TADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAII-- 844

  Fly  1005 MDTTGRTVLDKSGNGHSSNSNPFNKDDLSAILKFGAEELF--KDEQEHDDDLVCDIDEILRRAET 1067
              :.|.|    .||.::..:.| |..:|||||||||..:|  .|.|:..:||  ::|::|..||.
Yeast   845 --SLGVT----DGNKYTKKNEP-NAGELSAILKFGAGNMFTATDNQKKLEDL--NLDDVLNHAED 900

  Fly  1068 RNEDPE-----MPADDLLSAFKVASIAAFEEEPSDSVSKQDQNAAGEEDDSKDWDDIIPEGFRKA 1127
            ....|:     :..::.|..|:|....|                      ..||||||||...|.
Yeast   901 HVTTPDLGESHLGGEEFLKQFEVTDYKA----------------------DIDWDDIIPEEELKK 943

  Fly  1128 IDDQERAKE-----MEDLYLPPRRKTAANQNEGKRGAGKGGKGKQQADDSGGDSDYELGSDGSGD 1187
            :.|:|:.::     .|.|.:..||..|.          |..|.....|.:..:||       |.|
Yeast   944 LQDEEQKRKDEEYVKEQLEMMNRRDNAL----------KKIKNSVNGDGTAANSD-------SDD 991

  Fly  1188 DGRPRKRGRPTMKEKITGFTDAELRRFIRSYKKFPAPLHRMEAIACDAELQEKPLAELKRLGEML 1252
            |...|...|......:....::|:|...::..||......::.:..|..|   |:...::.||..
Yeast   992 DSTSRSSRRRARANDMDSIGESEVRALYKAILKFGNLKEILDELIADGTL---PVKSFEKYGETY 1053

  Fly  1253 HDR------CVQFLHEHKEEESKTAATD-------------------------ETP----GAKQR 1282
            .:.      ||     |:||:::....:                         :.|    ..|:|
Yeast  1054 DEMMEAAKDCV-----HEEEKNRKEILEKLEKHATAYRAKLKSGEIKAENQPKDNPLTRLSLKKR 1113

  Fly  1283 RARAT-FSVKLGGVSFNAKKLLACEQELQPLNEIMPS--------------MPEERQQWSFNIKT 1332
            ..:|. |:.| |..|.||:.||:..::|:.|..::.|              .|:..|.||.|   
Yeast  1114 EKKAVLFNFK-GVKSLNAESLLSRVEDLKYLKNLINSNYKDDPLKFSLGNNTPKPVQNWSSN--- 1174

  Fly  1333 RAPVFDVDWGIEEDTKLLCGIYQYGIGSWEQMKLDPTLKLTDKILLNDTRKPQAKQ--------- 1388
                    |..|||.|||.|:::||.|||.|::.||.|.:||||.||:...|.||:         
Yeast  1175 --------WTKEEDEKLLIGVFKYGYGSWTQIRDDPFLGITDKIFLNEVHNPVAKKSASSSDTTP 1231

  Fly  1389 ---------------------LQTRAEYLLKIIKKNVEL-------------TKGGQRRQRRPRA 1419
                                 |..|.:|||..::..:..             |...::|||:|  
Yeast  1232 TPSKKGKGITGSSKKVPGAIHLGRRVDYLLSFLRGGLNTKSPSADIGSKKLPTGPSKKRQRKP-- 1294

  Fly  1420 SRANDAKAASQSASSTIDAKPHDGEDA-------AGDARTVAESSNSQVDPSTASPHNAPATEQH 1477
              ||.:|:.:...:|   ::|.:|..:       .|.|..:   :|:::.|      |:|.    
Yeast  1295 --ANHSKSMTPEITS---SEPANGPPSKRMKALPKGPAALI---NNTRLSP------NSPT---- 1341

  Fly  1478 GDPAKKAKKSKARSKKTSASDNNGNKPMHFTANNEPRALEVLGDLDPSIFNECKEKMRPVKKALK 1542
              |..|:|.|:....:.|::.::|      :|:.:        :.|.....:|:..|..::.:||
Yeast  1342 --PPLKSKVSRDNGTRQSSNPSSG------SAHEK--------EYDSMDEEDCRHTMSAIRTSLK 1390

  Fly  1543 ALDQPDVSLSDQDQLQHTRDCLLQIGKQIDVCLNPYAETEKKEWRSNLWYFVSKFTELDAK--RL 1605
            .|.:...||..::..:..:..|..||..|:.......:...:::|.:||.:.:.|...|.|  :|
Yeast  1391 RLRRGGKSLDRKEWAKILKTELTTIGNHIESQKGSSRKASPEKYRKHLWSYSANFWPADVKSTKL 1455

  Fly  1606 FKIY 1609
            ..:|
Yeast  1456 MAMY 1459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chd1NP_001245851.1 CHROMO 374..422 CDD:237991 19/50 (38%)
Chromo 458..509 CDD:278797 18/53 (34%)
SNF2_N 548..829 CDD:278600 142/285 (50%)
DEXDc 564..709 CDD:238005 75/148 (51%)
Helicase_C 852..967 CDD:278689 83/114 (73%)
DUF4208 1521..1610 CDD:290618 20/91 (22%)
DUF3824 1795..>1894 CDD:289625
CHD1NP_011091.1 CD1_tandem_CHD1_yeast_like 175..247 CDD:349312 25/90 (28%)
CD2_tandem_ScCHD1_like 283..341 CDD:349311 18/57 (32%)
PLN03142 363..>961 CDD:215601 297/631 (47%)
Cdh1_DBD_1 1010..1129 CDD:408024 22/127 (17%)
SANT_TRF 1175..>1204 CDD:212558 16/28 (57%)
DUF4208 1368..1460 CDD:404744 20/100 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157346836
Domainoid 1 1.000 275 1.000 Domainoid score I267
eggNOG 1 0.900 - - E2759_KOG0384
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 728 1.000 Inparanoid score I82
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002141
OrthoInspector 1 1.000 - - otm46623
orthoMCL 1 0.900 - - OOG6_102222
Panther 1 1.100 - - LDO PTHR45623
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R569
SonicParanoid 1 1.000 - - X1425
TreeFam 1 0.960 - -
1312.780

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