Sequence 1: | NP_001245851.1 | Gene: | Chd1 / 33505 | FlyBaseID: | FBgn0250786 | Length: | 1900 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_011091.1 | Gene: | CHD1 / 856911 | SGDID: | S000000966 | Length: | 1468 | Species: | Saccharomyces cerevisiae |
Alignment Length: | 1629 | Identity: | 523/1629 - (32%) |
---|---|---|---|
Similarity: | 808/1629 - (49%) | Gaps: | 343/1629 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 121 SDSDAEGPSDQRNQSINNANTSSSLPKPEQNEEEDNETEAGQQQPASDASADESSDSSANVSPTS 185
Fly 186 SSSSSEEEEEDYRPKRTRQARKPPTAAEKSKKAPAPKNKKKTWDSDESDESEDSDDEVSTAQKRK 250
Fly 251 PAATTSRSKLAQQQQRRRVKPFSSEDSDDDDASKRCATRRKGAAVSYK-EASEDEATDSEDLLEF 314
Fly 315 EYDESQAAT-----TAATAEEEEKCETIERILAQRAGKRGCTGNQTTIYAIEENGFDPHAGFDEK 374
Fly 375 QTPD---AETEAQFLIKWKGWSYIHNTWESEATLRDMKAKGMKKLDNFIKK---EKEQAYWRRYA 433
Fly 434 GPEDIDYFECQLELQHELLKSYNNVDRII-AKGSKPDDGTE--EYLCKWQSLPYAESTWEDAALV 495
Fly 496 LRKWQRCAEQFNDRESSKCTPSRHCRVIKYRPKFSRIKNQPEFLSSGLTLRDYQMDGLNWLLHSW 560
Fly 561 CKENSVILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAPDMNVVTY 625
Fly 626 LGDIKSRELIQQYEW----QFESSKRLKFNCILTTYEIVLKDKQFLGTLQWAALLVDEAHRLKND 686
Fly 687 DSLLYKSLKEFDTNHRLLITGTPLQNSLKELWALLHFIMPDKFDTWENFEVQHGNAEDKGYTR-L 750
Fly 751 HQQLEPYILRRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFDALRKGKRGSTSTFLNI 815
Fly 816 VIELKKCCNHAALIRPSEFELM------GLQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVLI 874
Fly 875 FSQMVRMLDVLADYLQKRHFPFQRLDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINLA 939
Fly 940 TADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQR 1004
Fly 1005 MDTTGRTVLDKSGNGHSSNSNPFNKDDLSAILKFGAEELF--KDEQEHDDDLVCDIDEILRRAET 1067
Fly 1068 RNEDPE-----MPADDLLSAFKVASIAAFEEEPSDSVSKQDQNAAGEEDDSKDWDDIIPEGFRKA 1127
Fly 1128 IDDQERAKE-----MEDLYLPPRRKTAANQNEGKRGAGKGGKGKQQADDSGGDSDYELGSDGSGD 1187
Fly 1188 DGRPRKRGRPTMKEKITGFTDAELRRFIRSYKKFPAPLHRMEAIACDAELQEKPLAELKRLGEML 1252
Fly 1253 HDR------CVQFLHEHKEEESKTAATD-------------------------ETP----GAKQR 1282
Fly 1283 RARAT-FSVKLGGVSFNAKKLLACEQELQPLNEIMPS--------------MPEERQQWSFNIKT 1332
Fly 1333 RAPVFDVDWGIEEDTKLLCGIYQYGIGSWEQMKLDPTLKLTDKILLNDTRKPQAKQ--------- 1388
Fly 1389 ---------------------LQTRAEYLLKIIKKNVEL-------------TKGGQRRQRRPRA 1419
Fly 1420 SRANDAKAASQSASSTIDAKPHDGEDA-------AGDARTVAESSNSQVDPSTASPHNAPATEQH 1477
Fly 1478 GDPAKKAKKSKARSKKTSASDNNGNKPMHFTANNEPRALEVLGDLDPSIFNECKEKMRPVKKALK 1542
Fly 1543 ALDQPDVSLSDQDQLQHTRDCLLQIGKQIDVCLNPYAETEKKEWRSNLWYFVSKFTELDAK--RL 1605
Fly 1606 FKIY 1609 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Chd1 | NP_001245851.1 | CHROMO | 374..422 | CDD:237991 | 19/50 (38%) |
Chromo | 458..509 | CDD:278797 | 18/53 (34%) | ||
SNF2_N | 548..829 | CDD:278600 | 142/285 (50%) | ||
DEXDc | 564..709 | CDD:238005 | 75/148 (51%) | ||
Helicase_C | 852..967 | CDD:278689 | 83/114 (73%) | ||
DUF4208 | 1521..1610 | CDD:290618 | 20/91 (22%) | ||
DUF3824 | 1795..>1894 | CDD:289625 | |||
CHD1 | NP_011091.1 | CD1_tandem_CHD1_yeast_like | 175..247 | CDD:349312 | 25/90 (28%) |
CD2_tandem_ScCHD1_like | 283..341 | CDD:349311 | 18/57 (32%) | ||
PLN03142 | 363..>961 | CDD:215601 | 297/631 (47%) | ||
Cdh1_DBD_1 | 1010..1129 | CDD:408024 | 22/127 (17%) | ||
SANT_TRF | 1175..>1204 | CDD:212558 | 16/28 (57%) | ||
DUF4208 | 1368..1460 | CDD:404744 | 20/100 (20%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C157346836 | |
Domainoid | 1 | 1.000 | 275 | 1.000 | Domainoid score | I267 |
eggNOG | 1 | 0.900 | - | - | E2759_KOG0384 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 728 | 1.000 | Inparanoid score | I82 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0002141 | |
OrthoInspector | 1 | 1.000 | - | - | otm46623 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_102222 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR45623 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R569 |
SonicParanoid | 1 | 1.000 | - | - | X1425 | |
TreeFam | 1 | 0.960 | - | - | ||
13 | 12.780 |