DRSC/TRiP Functional Genomics Resources

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Protein Alignment Chd1 and rad54l2

DIOPT Version :10

Sequence 1:NP_001245851.1 Gene:Chd1 / 33505 FlyBaseID:FBgn0250786 Length:1900 Species:Drosophila melanogaster
Sequence 2:NP_001076824.1 Gene:rad54l2 / 733747 XenbaseID:XB-GENE-5829376 Length:1396 Species:Xenopus tropicalis


Alignment Length:1367 Identity:295/1367 - (21%)
Similarity:471/1367 - (34%) Gaps:472/1367 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   136 INNANTSSSLPK--PEQNEEEDNETEAGQQQPASDASADESSDSSANVSPTSSSSSSEEEEEDYR 198
            :::|:.|.|.|:  ||..|||:.:.|      ..|...:|..|...|      ....|::::|..
 Frog     1 MSDASISGSEPELDPEDMEEEEEDDE------DDDEEEEEEEDEEDN------DGDDEDDKQDIN 53

  Fly   199 PKRTRQARKPPTAAEKSKKA----PAPKNKKKTWD-SDESDESEDSDDEVSTAQKRKPAATTSRS 258
                          |||:.|    .:|:..::.|. |..|.:|....||....:.:|||      
 Frog    54 --------------EKSQNAALGEDSPEQGEEGWKRSTTSGQSGQESDEAKKKRLQKPA------ 98

  Fly   259 KLAQQQQRRRVKPFSSEDSDDDDASKRCATRRKGAAVSYKEASEDEATDSEDLLEFEYDESQAAT 323
                 ..||.::....||                                           |..:
 Frog    99 -----NLRRNIRKLLRED-------------------------------------------QLES 115

  Fly   324 TAATAEEEEKCETIERILAQRAGKRGCTGNQTTIYAIEENGFDPHAGFDEKQTPDAET----EAQ 384
            ...||::|| .|..:|:..||                             |..|...|    ...
 Frog   116 VTKTAQQEE-LERRKRLEQQR-----------------------------KDYPLPLTLPPVSLD 150

  Fly   385 FLIKWKGWSYIHNTWESEATLRDMKAKGMKKLDNFIKKEKEQAYWRRYAGPEDIDYFECQLELQH 449
            ||             :.|..||......:.|....|..:..       :|..|          ..
 Frog   151 FL-------------QEEIELRAADVSQLVKSQEIICLDSS-------SGESD----------DE 185

  Fly   450 ELLKSYNNVDRIIAKGSKPDDGTEEYLCKWQSLPYAESTWE-DAALVLRKWQRCAEQFNDRESSK 513
            ..:||::..|.||...|    |.|:.|   |....|:||.| |..:..   :......||..:..
 Frog   186 GKVKSHSIKDEIIELSS----GEEDNL---QISDNADSTNEVDGDITT---ENSGSHVNDALNQA 240

  Fly   514 CTPSRHCRVIKYRPKFSRIKNQPEFLSSGLTLRDYQMDGLNWLLHSWCKENSV------------ 566
            ....|....|.:.|....|...|:...:   ::.:|:.|:.:|.     :|.|            
 Frog   241 DHLGRVLVNINHPPNEKDIFLAPQLARA---VKSHQIGGIRFLY-----DNLVESLERFSGSSGF 297

  Fly   567 --ILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAP-------DMNV 622
              |||..||||||:|.|.||..||: |......|.:||::|:..|..||::|.|       |.| 
 Frog   298 GCILAHSMGLGKTLQVISFLDVLFQ-HTSAKTVLAIVPVNTLQNWLAEFNMWLPPPESLPKDHN- 360

  Fly   623 VTYLGDIKSRELIQQYEWQFE--------SSKRLKF--------NCILTTYE------------- 658
                     :||:|...::..        ::.|.|.        ..:|..||             
 Frog   361 ---------QELVQPRAFKVHTMNDEHKTTAARAKVVNDWATDGGVLLMGYEMYRLLSLKKSFTA 416

  Fly   659 ------------IVL------KDKQFLGTLQWA-------ALLVDEAHRLKNDDSLLYKSLKEFD 698
                        :::      :.::.|..::.|       .::.||.||:||..:...::||...
 Frog   417 GRKKKSKKAAGPVIIDLDEEDRQQEMLKGIEKALSRPGPDVVICDEGHRIKNCHASTSQALKNIR 481

  Fly   699 TNHRLLITGTPLQNSLKELWALLHFIMPDKFDTWENFE------VQHGNA-----EDKGYTR--- 749
            :..|:::||.||||:|.|.|.::.|:.||...|.:.|.      :.:|..     :||...|   
 Frog   482 SRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCVDSTPQDKRLMRYRS 546

  Fly   750 --LHQQLEPYILRRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFDALRKGKRGSTSTF 812
              ||..||.::.||....::..||.|.|.::.|.::.:|:..|...:.:..||...|..|     
 Frog   547 HVLHSLLEGFVQRRGHTVLKAQLPFKEEHVILVRLSKIQRDLYTEFMNRFRDAGNSGWLG----- 606

  Fly   813 LNIVIELKKCC---NHAAL-----------------------------------IRPSEF----- 834
            ||.:.....||   ||..:                                   :.|:..     
 Frog   607 LNPLKAFCVCCKIWNHPDVLYEALQKENLANEQDLDVEDLGTNNRCNAQSGKIKVEPNSLGALMG 671

  Fly   835 ------ELMGL----QQDEALQTL----------------LKGSGKLVLLDKLLCRLKETGHRVL 873
                  :|.|:    ..::|.|.:                |:.|.|:|||..|:......|.::|
 Frog   672 ETAHTKQLQGIVLNPSHEKANQVVTYEWAKEILSDYIPGQLQNSPKMVLLFHLIEESMRMGDKIL 736

  Fly   874 IFSQMVRMLDVLADYLQKRHFP------------------FQRLDGSIKGEMRRQALDHFNAEGS 920
            :|||.:..|.::.::|.||..|                  :.|||||.....|.:.::.||...:
 Frog   737 VFSQSLSTLSIMEEFLAKRKMPIPAGSDGQEGHTWIRNVNYYRLDGSTSASERERLINQFNDPSN 801

  Fly   921 QD-FCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVE 984
            :. :.||||||||.||:||..|:.|::||:.|||.:|.||..|.:|.||:....|||||:..::|
 Frog   802 EKVWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQRKPCYIYRLVSDFTLE 866

  Fly   985 EQIVER--AKQKM---VLD-----------------HLVIQRMDTTGRTVLDKSG---------- 1017
            ::|.:|  .||.|   |:|                 |.|.:..|.: |..||.|.          
 Frog   867 KKIYDRQITKQGMSDRVVDDLNPEVNFTRREVENLLHFVEEEPDAS-RQHLDSSSFHEAVLQKAC 930

  Fly  1018 --NGHSSNSNPFNKDD---------LSAILKFGAEELFKDEQEHD---------------DDLVC 1056
              ..|.....||..:.         |:...|..|:..:::|:...               |..:.
 Frog   931 LQYPHLITKEPFQHESLLLDRKEQKLTLAEKKAAKRGYEEEKRASVPYTRPSYTQYYPAPDHNLG 995

  Fly  1057 DIDEILRRAETRNEDPEMPADDLLSAFKVASIAAFEEEP----------------SDSVSKQD-- 1103
            :|...    ..|:..|.|..||.    .|||:...:..|                |.||...:  
 Frog   996 NIPAF----SQRHWRPLMKGDDR----PVASVRPLQSTPIPMLPRHVSVNHPGSASASVHPYNFP 1052

  Fly  1104 ----QNAAGEEDDSKDWDDIIPEGFRKAIDDQERAKEMEDLYLPPRRK-TAANQNEGK----RGA 1159
                |.|...........||:..|...:.|.|.|....|.:::....| |....::|:    |.:
 Frog  1053 VNYLQRAGVLVQKVVTTTDIVIPGMTTSTDVQARISAGESIHVIRGTKGTYIRTSDGRIFAIRAS 1117

  Fly  1160 G--KGGKGKQQADDSGGDSDYELGSDG-----------SGDDGRPRKRGRPTMKEKITGFTDAEL 1211
            |  |.|:.::||......|.....|:|           |.|..||.....|.:..::..:.||..
 Frog  1118 GKQKSGEVRRQATSGAQGSSAPYLSNGRHSTSSPSQQDSEDPPRPLSPDSPEILNELQKYADAAA 1182

  Fly  1212 RR 1213
            .|
 Frog  1183 AR 1184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chd1NP_001245851.1 CD1_tandem_CHD1-2_like 339..421 CDD:349313 12/85 (14%)
CD2_tandem 454..508 CDD:349306 14/54 (26%)
PLN03142 531..>1066 CDD:215601 179/771 (23%)
CDH1_2_SANT_HL1 1205..1298 CDD:465731 3/9 (33%)
DUF4208 1521..1610 CDD:464035
rad54l2NP_001076824.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..103 31/138 (22%)
DEXHc_ARIP4 269..545 CDD:350827 69/291 (24%)
HepA <272..885 CDD:440319 160/633 (25%)
DEAH box 461..464 2/2 (100%)
LXXLL motif 1 549..553 2/3 (67%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1117..1168 12/50 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1194..1250
LXXLL motif 2 1273..1277
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1340..1396
Blue background indicates that the domain is not in the aligned region.

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