DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Chd1 and zranb3

DIOPT Version :9

Sequence 1:NP_001245851.1 Gene:Chd1 / 33505 FlyBaseID:FBgn0250786 Length:1900 Species:Drosophila melanogaster
Sequence 2:XP_017208927.1 Gene:zranb3 / 553237 ZFINID:ZDB-GENE-060712-1 Length:1112 Species:Danio rerio


Alignment Length:1317 Identity:275/1317 - (20%)
Similarity:441/1317 - (33%) Gaps:449/1317 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   545 LRDYQMDGLNWLLHSWCKENSVILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTAW 609
            |..:|.:|:.:.|   .:....::|||||||||||.|...| :||..   .|.|.|||.|....|
Zfish    36 LMPFQREGVCFAL---SRNGRCMIADEMGLGKTIQAISVAY-IFKQE---WPLLIVVPSSLKYPW 93

  Fly   610 QREFDLWAP-----DMNVVTYLGDIKSRELIQQYEWQFESSK--RLKFNCILTTYEIVLKDKQFL 667
            ..|.:.|.|     |:|:|....|..|          ..:||  .|.:..:.|....:|   :.|
Zfish    94 IEELEKWIPELDPRDINLVESKTDTMS----------ISTSKVTILGYGLLTTDARALL---EAL 145

  Fly   668 GTLQWAALLVDEAHRLKNDDSLLYKSLKEF--DTNHRLLITGTPLQNSLKELWALLHFIMPDKFD 730
            ...|:|.:||||:|.||:.::...|.|...  .....:|:||||.....:||:..:..:.|.:|.
Zfish   146 NKQQFAVVLVDESHYLKSRNAARSKILVPIIQSAKRAILLTGTPALGRPEELFMQIDALYPRRFG 210

  Fly   731 TWENFEVQHGNAEDKGY--------------TRLHQQLEPYILRRVKKDVEKSLPAKVEQILRVE 781
            ||.::..::.||..:.:              ..||::|...::||:|..|...||.|:.|  |:.
Zfish   211 TWSDYANKYCNAHYRYFGARRQWDCRGASHLDELHKRLSEIMIRRLKNQVLTQLPPKIRQ--RIP 273

  Fly   782 MTSLQKQYYKWILTKNFDALRKGKRGSTSTFLNIVIELKKCCNHAALIRPSEF-ELMGLQQDEAL 845
                            ||..:...:.::::|    .:.:|..:..:   .::| |:|.|......
Zfish   274 ----------------FDLPKDAAKEASASF----EQWEKLMSSES---ENQFVEVMSLITHMYK 315

  Fly   846 QTLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGEMRRQ 910
            ||.:..:|  .:.|.:...|:....:.|:|:..:.||....:.:.:....:.|:|||:....|.|
Zfish   316 QTAVAKAG--AVKDYIKMMLESEQLKFLVFAHHLSMLQACTEAVIEAKAGYIRIDGSVPSAERIQ 378

  Fly   911 ALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIY 975
            .:..|..:...... :||.:|.|.|:....|..|:..:..|||.:..||:.|||||||...|:|:
Zfish   379 LVHRFQNDPDTRVA-VLSIQAAGQGLTFTAASHVVFAELYWNPGHIKQAEDRAHRIGQTATVHIH 442

  Fly   976 RLVTARSVEEQIVERAKQKMVLDHLVIQRMDTTGRTVLDKSGNGHSSNSNPFNKDDLSAILKFGA 1040
            .|:...:.:               .|:..|.....||...:.||        .|:.|.      |
Zfish   443 YLIAKGTFD---------------TVMWAMLNRKETVTGSALNG--------KKEYLK------A 478

  Fly  1041 EELFKDEQEHDDDLVCDIDEILRRAETRNEDPEMPADDLLSAFKVASIAAFEEEPSDSVSKQDQN 1105
            ||   .:||..|.|      ...:|.|.|                                  |.
Zfish   479 EE---GDQEKWDFL------NFAQAWTPN----------------------------------QM 500

  Fly  1106 AAGEEDDSKDWDDIIPEGFRKAIDDQERAKEMEDLYLPPRRKTAANQNEGKRGAGKGGKGKQQAD 1170
            ..|:.:|.||       |...:..::::..::...:.|...|.               |.:::.:
Zfish   501 LKGDSEDDKD-------GVFFSHFERDKQHDIRSFFSPSVHKE---------------KKRKRTE 543

  Fly  1171 DSGGDSDYELGSDGSGDDGRPRKRGRPTMKEKITGF--TDAELRRFIRSYKKF--PAPLHRMEAI 1231
            ||        .||||.....| ....||...:...|  |..:...|....|:|  .:||.|... 
Zfish   544 DS--------TSDGSPLPQLP-AGAEPTQTPETQSFDLTADQGEDFSPQVKRFRQVSPLSRRGG- 598

  Fly  1232 ACDAELQEKPLAEL---KRLGEMLHDRCVQFLHEHKEEESKTAATDETPGAKQRRARATFSVKLG 1293
                  ::.||:.|   :||...|.      ...|.:              |...:..|||    
Zfish   599 ------KKSPLSPLFAPRRLSAGLQ------APRHNQ--------------KWNCSSCTFS---- 633

  Fly  1294 GVSFNAKKLLACEQELQPLNEIMPSMPEERQQWSFNIKTRAPVFDVDWGIEEDTKLLCGIYQYGI 1358
                |:..||.||....|.|                                             
Zfish   634 ----NSGLLLRCEMCDSPRN--------------------------------------------- 649

  Fly  1359 GSWEQMKLDPTLKLTDKILLNDTRKPQAKQLQTRAEYLLKIIKKNVELTKGGQRRQRRPRASRAN 1423
               .|..|.|...|.|                                                 
Zfish   650 ---VQKALSPPSSLAD------------------------------------------------- 662

  Fly  1424 DAKAASQSASSTIDAKPHDGEDAAGDARTVAESSNSQVDPSTASPHNAPATEQHGDPAKKAKKSK 1488
               .:|.|:.:||.....|.|:                :|||:|....|    |..|.::|..:.
Zfish   663 ---PSSSSSLTTICISDSDTEN----------------EPSTSSKIQTP----HKHPNQQASPNV 704

  Fly  1489 ARSKKTSASDNNGNKPMHFTAN--NEPRALEVLGDLDPSIFNECKEKMRPVKKALKALDQPDVSL 1551
            |.:.| ..|:..|:.|..|..:  |:..|.|..||. .|:: :|.:..     |.|..|:  :.:
Zfish   705 AETHK-DISEEQGSTPKTFNGDSANDDGAYEESGDC-VSVY-DCLKFC-----ASKNTDR--IYI 759

  Fly  1552 SDQDQLQ-HTRDCLLQIGKQIDVCLNPYAETEKKEWRSNLWYFVSKFTELDAKRLFKIYKHALKQ 1615
            .|:|.|. |.....|.|..|....|.|  |....:.|..:..||.:::.|.|      .|..:.:
Zfish   760 HDKDGLPLHCNFIPLDIRLQNWEELPP--EFNHSQNRRQVVRFVREWSSLTA------MKQRMVR 816

  Fly  1616 KAGG---------DGEAKGKDKGSSGSPAKSK----PNGVTTEEKEKERDRSGGKKKKKDKDKER 1667
            |:|.         :...:.:.:.||.|...||    ...:...:||      ||..:..:||   
Zfish   817 KSGRVFHSPILLLEELTQSQRRHSSTSRYLSKHDVAQTSIAVAQKE------GGALRIINKD--- 872

  Fly  1668 SGQARYPETGIPTSGRYADPPLKRKRDENDADASSGLAGAPGGGIGDNLKSMSFKRLNMDRHEDR 1732
              ...:..|   ::.:.||||      ..:.::|:.:...|..|....:.|              
Zfish   873 --SVAFKRT---STSKPADPP------NREPESSACVQTDPSAGFLQAVDS-------------- 912

  Fly  1733 KKHHRGPDYYGGSGPPM------GSGSYEGGSNSRRQGPTSPSTPRTGRGGYDPPPAPSGYTPEM 1791
                        ||.|:      .||...|.:                 ||:..|..       |
Zfish   913 ------------SGTPLCLSCQKPSGEQHGWA-----------------GGFCSPTC-------M 941

  Fly  1792 ERWQSRDRYSQDYKRDR 1808
            |.:|.|.  ||.|.|.|
Zfish   942 EDFQLRS--SQAYMRAR 956

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chd1NP_001245851.1 CHROMO 374..422 CDD:237991
Chromo 458..509 CDD:278797
SNF2_N 548..829 CDD:278600 79/303 (26%)
DEXDc 564..709 CDD:238005 50/153 (33%)
Helicase_C 852..967 CDD:278689 30/114 (26%)
DUF4208 1521..1610 CDD:290618 21/89 (24%)
DUF3824 1795..>1894 CDD:289625 7/14 (50%)
zranb3XP_017208927.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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