DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Chd1 and CG10445

DIOPT Version :9

Sequence 1:NP_001245851.1 Gene:Chd1 / 33505 FlyBaseID:FBgn0250786 Length:1900 Species:Drosophila melanogaster
Sequence 2:NP_001246974.1 Gene:CG10445 / 40938 FlyBaseID:FBgn0037531 Length:945 Species:Drosophila melanogaster


Alignment Length:1006 Identity:195/1006 - (19%)
Similarity:350/1006 - (34%) Gaps:365/1006 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   273 SSEDSDDDDASKRCATRRKGAAVSYKEAS-------EDEATDSEDLLEFEYDESQAATTAATAEE 330
            ||..||..:..|:..:.:..::|...::|       |.|..||.: |..||.::::|...:.:|.
  Fly     3 SSSPSDTTEIHKQSCSIQDQSSVPVPDSSGEINNWMEPEPVDSLE-LSGEYADNESAIFVSASEY 66

  Fly   331 EEKCETIERILAQRAGKRGCTGNQTTIYAIEENGFDPHAGFDEKQTPDAETEAQFLIKWKGWSYI 395
            .||...|::::.:             |..:|:         .::|..:..:|.:.|...|    :
  Fly    67 NEKKAQIDQLVQK-------------ILTMEQ---------QQRQLEENASETKELCDLK----L 105

  Fly   396 HNTWESEATLRDMKAKGMKKLDNFIK----KEKEQAYWRRYAGPEDIDYFECQLELQHELLKSYN 456
            |        |..:.|: ::.|..|:.    :|.:|               |.::|...||:    
  Fly   106 H--------LEKLNAR-LEALGEFLDTLRLREDQQ---------------EIKIEDNSELV---- 142

  Fly   457 NVDRIIAKGSKPDDGTEEYLCKWQSLPYAESTWEDAALVLRKWQRCAEQFNDRESSKCTPSRHC- 520
                         |.||:  .||.:|....:.:.      :|....|.||...:|:.....:.. 
  Fly   143 -------------DHTEQ--PKWSNLYSGLNRYR------QKANHTAAQFYQHKSNIIDSLKTLY 186

  Fly   521 RVIKYRPKFSRIKNQPEFLSSGLTLRDYQMDGLNWL-LHSWCKENSVILADEMGLGKTIQTICFL 584
            ..|:.||....::.||..|.  :.|..:|...|.|: .....|.:..||||:||||||:..|..:
  Fly   187 EPIQPRPAIDDLEKQPALLL--VRLLKHQQSCLKWMQFRERQKISGGILADDMGLGKTLSMIALI 249

  Fly   585 ------------------------------------YSLF-------KIHHLYGP---------- 596
                                                .|:|       |....|.|          
  Fly   250 LASEETKNRKREEKKKALTLKWTQEFNRVYCKEIRKISMFDDEEESGKEEEQYEPPEKRTCHVKT 314

  Fly   597 ---------------------------------------------------------FLCVVPLS 604
                                                                     .|.|.|:|
  Fly   315 KKINQFRILDDDDNDAGDKAVVEDEQKDLLAKTPEPEVFSSDEEEEHLSNGRYPSANTLVVCPMS 379

  Fly   605 TMTAWQREF--DLWAPDMNVVTYLGDIKSRELIQQYEWQFESSKRLKFNCILTTYEIVLKDKQFL 667
            .|..|..|.  .:....:.|:|:.|.       .::|...|:.:  .::.::|:|.:|:.:.:..
  Fly   380 VMCQWAHEVASKVAQNAIRVLTFHGP-------NRHEIGIEAFR--SYDLVITSYNLVVNELKRY 435

  Fly   668 G------TLQWAALLVDEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPLQNSLKELWALLHFIMP 726
            |      .:.|..:::||||.::|..:....|:.:...:....:||||:||...:::|||.|:..
  Fly   436 GNTSPLFAVYWNRVILDEAHIIRNSKTNCCNSVCQLRAHCHWALTGTPVQNRGVDVFALLRFVNV 500

  Fly   727 DKFDTWENFEVQHGNAEDKGYTRLHQQLEPYILRRVKKDVEKS--LPA----KVE----QILRVE 781
            ..|...:.:: ::.|....|:.||:..::|.:|||.|:.::.|  :||    |:|    |:.:.|
  Fly   501 PNFQDLQQWK-KNLNESMLGHRRLNFIIKPLMLRRTKQKLQASGDMPALPSLKIELICVQLSKTE 564

  Fly   782 MT----------------SLQKQ-------YYKWILTKNFDA--------------------LRK 803
            |.                .||::       ||....|..|.|                    ...
  Fly   565 MAVYQILSAISKKIFTQFLLQREKGNSDLNYYSLERTPQFIAGHMSDERYNEIYERFLKSLGYNP 629

  Fly   804 GKRGSTSTFLNIVIELKKCCNHAALI--------------------------------------- 829
            |::......|.:::.|::.|.|..|:                                       
  Fly   630 GEKILGIYILVLLLRLRQFCCHPGLMIGMLRGALTAEDVQNVKVDASDVEGQLKMDVLAELDKFD 694

  Fly   830 ----------------RPSEFELMGLQQD---------------------------EALQTL--- 848
                            |...|:|..::.:                           .||:.|   
  Fly   695 ETDSEDDCCDEEDSTRRDGNFKLEVIKDEIKEENVPWDSGDDLPTASSFEDQLDSARALKLLNPQ 759

  Fly   849 ------LKGSGKL-VLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGE 906
                  ::.|.|| :::|||...|..|..::::.||.|..|.::...||...:.....:|.:..:
  Fly   760 NPIFQFIRPSAKLKMVIDKLEELLTGTNDKIIVTSQWVSYLAIVRKRLQDLSWETLDFNGQLTAK 824

  Fly   907 MRRQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQ 971
            .|...|..||| .::....|||..|||:|:||..|:.::|.|..||||.:.|||.|.:|.||...
  Fly   825 EREIVLRDFNA-NNEKRVLLLSLTAGGVGLNLNVANHMLIVDLHWNPQLERQAQDRIYRYGQTKP 888

  Fly   972 VNIYRLVTARSVEEQIVERAKQKMVLDHLVI 1002
            ..|||.:...:||::|......|:.:..:|:
  Fly   889 TFIYRYMCQDTVEQRIKSLQDCKLEIAKVVL 919

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chd1NP_001245851.1 CHROMO 374..422 CDD:237991 9/51 (18%)
Chromo 458..509 CDD:278797 10/50 (20%)
SNF2_N 548..829 CDD:278600 83/452 (18%)
DEXDc 564..709 CDD:238005 41/262 (16%)
Helicase_C 852..967 CDD:278689 41/115 (36%)
DUF4208 1521..1610 CDD:290618
DUF3824 1795..>1894 CDD:289625
CG10445NP_001246974.1 HepA <90..945 CDD:223627 173/896 (19%)
DEAD-like_helicase_N 209..534 CDD:421690 61/334 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467137
Domainoid 1 1.000 47 1.000 Domainoid score I705
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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