Sequence 1: | NP_001245851.1 | Gene: | Chd1 / 33505 | FlyBaseID: | FBgn0250786 | Length: | 1900 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001014591.1 | Gene: | Mi-2 / 40170 | FlyBaseID: | FBgn0262519 | Length: | 1983 | Species: | Drosophila melanogaster |
Alignment Length: | 1986 | Identity: | 534/1986 - (26%) |
---|---|---|---|
Similarity: | 822/1986 - (41%) | Gaps: | 558/1986 - (28%) |
- Green bases have known domain annotations that are detailed below.
Fly 32 DEQDDTREEANGTDHSGSGSGSGSSGSDSDSDSSSGNSSDGRSSPEPEDKSLSVAGFPPTAAAAQ 96
Fly 97 ADSKTNGFTDDQEDSSSDGSSGSDSDSDAEGPS---------DQRNQSINNANTSSSLPKPEQ-- 150
Fly 151 ------------NEEE--------------------DN--------------------ETEAGQQ 163
Fly 164 QPASDASADESSDSSANVS------PTSSSSS----------------SEEEEEDYRPKRTR--- 203
Fly 204 --QARKPPTAAEKSKKAPAPK----NKKKTWDSDE----------------------SDESED-- 238
Fly 239 -------SDDEVSTAQK--------RKPAATTSRSKLAQQQQRRRVKPFSSEDSDDDDASKRCAT 288
Fly 289 RRKGAAV--------SYKEASEDEATDSEDLLEFEYDESQAATTAATAEEEEKCETIERILAQ-- 343
Fly 344 -----------------------------RAGKRGC---TGNQTTI----YAIEENGFDPHAGFD 372
Fly 373 EKQTPDAETEAQFLIKWKGWSYIHNTWESEATLRDMKAKGMKKLDNFIKK--EKEQAYWRRYAGP 435
Fly 436 EDIDYFECQLELQHELLKSYNNV----DRIIAKGSKPD--------------DGTEEYLCKWQSL 482
Fly 483 PYAESTWEDAALVLRKWQRCAEQFNDRE---SSKCTPSRHCRVIKYRPKFSRIK----------- 533
Fly 534 -----------------NQPEFL-SSGLTLRDYQMDGLNWLLHSWCKENSVILADEMGLGKTIQT 580
Fly 581 ICFLYSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAPDMNVVTYLGDIKSRELIQQYEWQFES- 644
Fly 645 -----------SKRLKFNCILTTYEIVLKDKQFLGTLQWAALLVDEAHRLKNDDSLLYKSLKEFD 698
Fly 699 TNHRLLITGTPLQNSLKELWALLHFIMPDKFDTWENFEVQHGN-AEDKGYTRLHQQLEPYILRRV 762
Fly 763 KKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFDALRKGKRGSTSTFLNIVIELKKCCNHAA 827
Fly 828 LIRPSEFE-----LMGLQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLAD 887
Fly 888 YLQKRHFPFQRLDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWN 952
Fly 953 PQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRMDTTGRTVLDKSG 1017
Fly 1018 NGHSSNSNPFNKDDLSAILKFGAEELFKDEQE----HDDDLVCDIDEILRRAETRNEDPEMPADD 1078
Fly 1079 LLSAFKVASIAAFEEEPSD--SVSKQDQNAAGEEDDSKDWDDIIPEGFRKAIDDQERAKEMEDLY 1141
Fly 1142 LPPRRKTAANQNEGKRGAGKGGKGKQQADDSGGD--SDYELGSDGSGDD-------GRPRKRGR- 1196
Fly 1197 ----------PTMKE-----KITGFTDAELRRFIRSYKKFPAPLHRMEAIACDAELQEKPLAELK 1246
Fly 1247 RLGEMLHDRCVQFLHEHK-EEESKTAAT--DETPGAKQRRARATFSVKLGGVSFNAKKLLACEQE 1308
Fly 1309 LQPLNEIMPSMPEERQQWSFNIKTRAPVFDVDWGIEEDTKLLCGIYQYGIGSWEQMKLDPTLKLT 1373
Fly 1374 DKILLNDTRKPQAKQLQTRAEYLLKIIKKNVELTKGGQRRQRRPRASRANDAKAASQSASSTIDA 1438
Fly 1439 KPHDGEDAAGDARTVAESSNSQVDPSTASPHNAPATEQHGDPAKKAKKSKARSKKTSASDNNGNK 1503
Fly 1504 PMHFTANNEPRALEVLGDLDPSIFNECKEKMRPVKKALKALDQPDVSLSDQDQLQHTRDCLLQIG 1568
Fly 1569 KQIDVCLNPYAETEKKEWRSNLWYFVSKFTELDAKRLFKIYKHALKQKAGGDGEAKGKDKGSSGS 1633
Fly 1634 PAKSKPNGVTTEEKEKERDRSGGKKKKKDKDKERSGQARYPETG-----------IPTSGRYADP 1687
Fly 1688 PLKRKRDEND-ADASSGLAGAPGGGIGDNLKSMSFK 1722 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Chd1 | NP_001245851.1 | CHROMO | 374..422 | CDD:237991 | 14/47 (30%) |
Chromo | 458..509 | CDD:278797 | 17/68 (25%) | ||
SNF2_N | 548..829 | CDD:278600 | 139/293 (47%) | ||
DEXDc | 564..709 | CDD:238005 | 76/156 (49%) | ||
Helicase_C | 852..967 | CDD:278689 | 75/114 (66%) | ||
DUF4208 | 1521..1610 | CDD:290618 | 4/88 (5%) | ||
DUF3824 | 1795..>1894 | CDD:289625 | |||
Mi-2 | NP_001014591.1 | CHDNT | 138..190 | CDD:285335 | 5/51 (10%) |
PHD1_CHD_II | 380..422 | CDD:277006 | 4/41 (10%) | ||
PHD2_CHD_II | 440..482 | CDD:277007 | 2/41 (5%) | ||
CHROMO | 490..558 | CDD:237991 | 18/72 (25%) | ||
CHROMO | 615..667 | CDD:214605 | 14/51 (27%) | ||
SNF2_N | 734..1028 | CDD:278600 | 139/293 (47%) | ||
DEXDc | 751..907 | CDD:238005 | 76/155 (49%) | ||
Helicase_C | 1053..1167 | CDD:278689 | 75/113 (66%) | ||
DUF1087 | <1292..1337 | CDD:283996 | 10/53 (19%) | ||
DUF1086 | 1380..1517 | CDD:283992 | 31/204 (15%) | ||
CHDCT2 | 1756..1927 | CDD:285336 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C45467209 | |
Domainoid | 1 | 1.000 | 47 | 1.000 | Domainoid score | I705 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 1 | 1.000 | - | - | otm46623 | |
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | P | PTHR45623 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
5 | 4.940 |