DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Chd1 and Mi-2

DIOPT Version :9

Sequence 1:NP_001245851.1 Gene:Chd1 / 33505 FlyBaseID:FBgn0250786 Length:1900 Species:Drosophila melanogaster
Sequence 2:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster


Alignment Length:1986 Identity:534/1986 - (26%)
Similarity:822/1986 - (41%) Gaps:558/1986 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 DEQDDTREEANGTDHSGSGSGSGSSGSDSDSDSSSGNSSDGRSSPEPEDKSLSVAGFPPTAAAAQ 96
            :|.||..:|........:.:...|:.||:   ....|.:|.....:|||......|  ......:
  Fly     5 EENDDNFQEEEEAQEDNAPAAELSNDSDA---PLKPNQNDEDDDYDPEDSRRKKKG--KKRKTRK 64

  Fly    97 ADSKTNGFTDDQEDSSSDGSSGSDSDSDAEGPS---------DQRNQSINNANTSSSLPKPEQ-- 150
            .:.|.......:::.|.:.|.....|.:.|.||         :::..:....:.||.:|..|.  
  Fly    65 GEEKGRKKKKRKKNESEEDSDFVQHDEEVEYPSTSKRGRKRKEEKQAAKEKESASSGMPSVEDVC 129

  Fly   151 ------------NEEE--------------------DN--------------------ETEAGQQ 163
                        :|||                    :|                    |:....|
  Fly   130 SAFSVCNVEIEYSEEELQSLTTYKAFMHHVRPILQKENPKIAAPKLVMLVAAKWREFCESNPHIQ 194

  Fly   164 QPASDASADESSDSSANVS------PTSSSSS----------------SEEEEEDYRPKRTR--- 203
            |....|.:..|:..:.:|:      |.||.||                .|||||:.:|:|.|   
  Fly   195 QEGGAAGSGGSAGQARSVTGDEPEEPRSSRSSRNEKPDDIYEEAVEEEEEEEEEEKKPRRKRSGR 259

  Fly   204 --QARKPPTAAEKSKKAPAPK----NKKKTWDSDE----------------------SDESED-- 238
              :.|:|      |.|.|..|    .|:|...|||                      ||:|.|  
  Fly   260 GKKGRRP------SGKVPTLKIKLLGKRKRDSSDEEQDASGASERDSDLEFERMLQKSDDSADEK 318

  Fly   239 -------SDDEVSTAQK--------RKPAATTSRSKLAQQQQRRRVKPFSSEDSDDDDASKRCAT 288
                   :|:....||.        ||.|.|...:|..::.:.::.|.|...:..:.:....|..
  Fly   319 EAPVSSKADNSAPAAQDDGSGAPVVRKKAKTKIGNKFKKKNKLKKTKNFPEGEDGEHEHQDYCEV 383

  Fly   289 RRKGAAV--------SYKEASEDEATDSEDLLEFEYDESQAATTAATAEEEEKCETIERILAQ-- 343
            .::|..:        :|.....:...|.....::.....:|...||..|::::.:...|:...  
  Fly   384 CQQGGEIILCDTCPRAYHLVCLEPELDEPPEGKWSCPHCEADGGAAEEEDDDEHQEFCRVCKDGG 448

  Fly   344 -----------------------------RAGKRGC---TGNQTTI----YAIEENGFDPHAGFD 372
                                         |..:..|   ||....|    :|...|...|.....
  Fly   449 ELLCCDSCPSAYHTFCLNPPLDTIPDGDWRCPRCSCPPLTGKAEKIITWRWAQRSNDDGPSTSKG 513

  Fly   373 EKQTPDAETEAQFLIKWKGWSYIHNTWESEATLRDMKAKGMKKLDNFIKK--EKEQAYWRRYAGP 435
            .|.:.....|  :.|||...||.|..|..|..| |:....|  :.:|.:|  .:|...:......
  Fly   514 SKNSNSRVRE--YFIKWHNMSYWHCEWVPEVQL-DVHHPLM--IRSFQRKYDMEEPPKFEESLDE 573

  Fly   436 EDIDYFECQLELQHELLKSYNNV----DRIIAKGSKPD--------------DGTEEYLCKWQSL 482
            .|..|...|.......:|:.::.    :|....|.||:              ||:..||.||:.|
  Fly   574 ADTRYKRIQRHKDKVGMKANDDAEVLEERFYKNGVKPEWLIVQRVINHRTARDGSTMYLVKWREL 638

  Fly   483 PYAESTWEDAALVLRKWQRCAEQFNDRE---SSKCTPSRHCRVIKYRPKFSRIK----------- 533
            ||.:||||:....::..::..:.:.|..   :|:.|.||..:..|.|.  |::|           
  Fly   639 PYDKSTWEEEGDDIQGLRQAIDYYQDLRAVCTSETTQSRSKKSKKGRK--SKLKVEDDEDRPVKH 701

  Fly   534 -----------------NQPEFL-SSGLTLRDYQMDGLNWLLHSWCKENSVILADEMGLGKTIQT 580
                             :||.|| .:|:.|..||::|:|||.:||.:....||||||||||||||
  Fly   702 YTPPPEKPTTDLKKKYEDQPAFLEGTGMQLHPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQT 766

  Fly   581 ICFLYSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAPDMNVVTYLGDIKSRELIQQYEWQFES- 644
            :.|||||:|..|..||||..|||||:..|:|||:|||||...:||:||..||.:|::.|..||. 
  Fly   767 VTFLYSLYKEGHCRGPFLVAVPLSTLVNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEG 831

  Fly   645 -----------SKRLKFNCILTTYEIVLKDKQFLGTLQWAALLVDEAHRLKNDDSLLYKSLKEFD 698
                       :.:.|||.:||:||::..|...||::.||.|:||||||||::.|..::.|..:.
  Fly   832 AIRGSKVSRLRTTQYKFNVLLTSYELISMDAACLGSIDWAVLVVDEAHRLKSNQSKFFRILNSYT 896

  Fly   699 TNHRLLITGTPLQNSLKELWALLHFIMPDKFDTWENFEVQHGN-AEDKGYTRLHQQLEPYILRRV 762
            ..::||:|||||||:|:||:.||:|:..|||:..:.|:.:..: ::::...|||:.|.|::|||:
  Fly   897 IAYKLLLTGTPLQNNLEELFHLLNFLSRDKFNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRL 961

  Fly   763 KKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFDALRKGKRGSTSTFLNIVIELKKCCNHAA 827
            |.||.|::|:|.|.|:|||::::||::||:|||||::||.....|.:.:.:||:::|||||||..
  Fly   962 KTDVLKNMPSKSEFIVRVELSAMQKKFYKFILTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPY 1026

  Fly   828 LIRPSEFE-----LMGLQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLAD 887
            |. ||..|     ..||.:   :.:|.|.:||||||.|:|.:||...|||||||||.:|||:|.|
  Fly  1027 LF-PSAAEEATTAAGGLYE---INSLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILED 1087

  Fly   888 YLQKRHFPFQRLDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWN 952
            :|:...:.::|:||.|.|.:|::|:|.|||.|:|.|.||||||||||||||||||||||:|||||
  Fly  1088 FLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWN 1152

  Fly   953 PQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRMDTTGRTVLDKSG 1017
            |.||:||.:|||||||.|:|.|||.||..||||::.:.||:||:|.|||::           ...
  Fly  1153 PHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVR-----------PGM 1206

  Fly  1018 NGHSSNSNPFNKDDLSAILKFGAEELFKDEQE----HDDDLVCDIDEILRRAETRNEDPEMPADD 1078
            .|..:|   |.|.:|..||:||.|:|||::.:    |.||..  :.|:|.|.....|:.|..|::
  Fly  1207 GGKGAN---FTKQELDDILRFGTEDLFKEDDKEEAIHYDDKA--VAELLDRTNRGIEEKESWANE 1266

  Fly  1079 LLSAFKVASIAAFEEEPSD--SVSKQDQNAAGEEDDSKDWDDIIPEGFRKAIDDQERAKEMEDLY 1141
            .||:|||||.|..|||..:  .:.|||    .|..|...|..::...:.:..:|..|:     |.
  Fly  1267 YLSSFKVASYATKEEEEEEETEIIKQD----AENSDPAYWVKLLRHHYEQHQEDVGRS-----LG 1322

  Fly  1142 LPPRRKTAANQNEGKRGAGKGGKGKQQADDSGGD--SDYELGSDGSGDD-------GRPRKRGR- 1196
            ...|.:...|..:|...|....:......|:|.:  |:|..|||..|.|       |..||..| 
  Fly  1323 KGKRVRKQVNYTDGGVVAADTTRDDSNWQDNGSEYNSEYSAGSDEDGGDDDFDDQNGAERKAKRR 1387

  Fly  1197 ----------PTMKE-----KITGFTDAELRRFIRSYKKFPAPLHRMEAIACDAELQEKPLAELK 1246
                      |.:..     ::.||...:.:.|:.:..::..|..       ||...:..:.:|:
  Fly  1388 LERRDDRPLPPLLARVGGNIEVLGFNARQRKSFLNAIMRYGMPPQ-------DAFNSQWLVRDLR 1445

  Fly  1247 RLGEMLHDRCVQFLHEHK-EEESKTAAT--DETPGAKQRRARATFSVKLGGVSFNAKKLLACEQE 1308
            ...|......|.....|. |..:..|.|  |..|  ::..:|.....::|.:|...||:    ||
  Fly  1446 GKSERNFKAYVSLFMRHLCEPGADNAETFADGVP--REGLSRQHVLTRIGVMSLIRKKV----QE 1504

  Fly  1309 LQPLNEIMPSMPEERQQWSFNIKTRAPVFDVDWGIEEDTKLLCGIYQYGIGSWEQMKLDPTLKLT 1373
            .:.:|... ||||                                                    
  Fly  1505 FEHINGYY-SMPE---------------------------------------------------- 1516

  Fly  1374 DKILLNDTRKPQAKQLQTRAEYLLKIIKKNVELTKGGQRRQRRPRASRANDAKAASQSASSTIDA 1438
              ::|    ||        .|.:...:|::|                             :.::|
  Fly  1517 --LIL----KP--------CEPVRSALKQDV-----------------------------AALEA 1538

  Fly  1439 KPHDGEDAAGDARTVAESSNSQVDPSTASPHNAPATEQHGDPAKKAKKSKARSKKTSASDNNGNK 1503
            .|     ..|:....|.:|||....::|:|..|||:|:..|..|.::|.|   .||||..:...:
  Fly  1539 PP-----TGGNVDKSATTSNSVTPATSAAPSPAPASEKGEDKDKDSEKEK---DKTSAEKSEVKQ 1595

  Fly  1504 PMHFTANNEPRALEVLGDLDPSIFNECKEKMRPVKKALKALDQPDVSLSDQDQLQHTRDCLLQIG 1568
            ......:.:|      ||:         ::..||::|.                           
  Fly  1596 EQEAEEDKKP------GDV---------KQENPVEEAA--------------------------- 1618

  Fly  1569 KQIDVCLNPYAETEKKEWRSNLWYFVSKFTELDAKRLFKIYKHALKQKAGGDGEAKGKDKGSSGS 1633
                                                                |:.|..|......
  Fly  1619 ----------------------------------------------------GDTKPSDAEVKTE 1631

  Fly  1634 PAKSKPNGVTTEEKEKERDRSGGKKKKKDKDKERSGQARYPETG-----------IPTSGRYADP 1687
            .||::|...|.:.:.||..::..|:|:|..||:     ..|.|.           :...|....|
  Fly  1632 VAKTEPKEETKDPEVKEEPKTEEKEKEKVDDKK-----PIPPTTVIDDDDDDVMIVKEDGELEKP 1691

  Fly  1688 PLKRKRDEND-ADASSGLAGAPGGGIGDNLKSMSFK 1722
            .....:|:.. |.|:|...||.|.|..|:|:.:..|
  Fly  1692 SASSPKDQKAVAAATSAATGATGKGAEDSLEVLKRK 1727

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chd1NP_001245851.1 CHROMO 374..422 CDD:237991 14/47 (30%)
Chromo 458..509 CDD:278797 17/68 (25%)
SNF2_N 548..829 CDD:278600 139/293 (47%)
DEXDc 564..709 CDD:238005 76/156 (49%)
Helicase_C 852..967 CDD:278689 75/114 (66%)
DUF4208 1521..1610 CDD:290618 4/88 (5%)
DUF3824 1795..>1894 CDD:289625
Mi-2NP_001014591.1 CHDNT 138..190 CDD:285335 5/51 (10%)
PHD1_CHD_II 380..422 CDD:277006 4/41 (10%)
PHD2_CHD_II 440..482 CDD:277007 2/41 (5%)
CHROMO 490..558 CDD:237991 18/72 (25%)
CHROMO 615..667 CDD:214605 14/51 (27%)
SNF2_N 734..1028 CDD:278600 139/293 (47%)
DEXDc 751..907 CDD:238005 76/155 (49%)
Helicase_C 1053..1167 CDD:278689 75/113 (66%)
DUF1087 <1292..1337 CDD:283996 10/53 (19%)
DUF1086 1380..1517 CDD:283992 31/204 (15%)
CHDCT2 1756..1927 CDD:285336
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467209
Domainoid 1 1.000 47 1.000 Domainoid score I705
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46623
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45623
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.940

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