DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Chd1 and Chd3

DIOPT Version :9

Sequence 1:NP_001245851.1 Gene:Chd1 / 33505 FlyBaseID:FBgn0250786 Length:1900 Species:Drosophila melanogaster
Sequence 2:NP_649111.1 Gene:Chd3 / 40111 FlyBaseID:FBgn0023395 Length:892 Species:Drosophila melanogaster


Alignment Length:849 Identity:345/849 - (40%)
Similarity:496/849 - (58%) Gaps:123/849 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   373 EKQTPDAETEAQFLIKWKGWSYIHNTWESEATL--------------RDMKAKGMKKLDNFIKKE 423
            |.:|...|...::.|||.|.||.|..|..|..:              .||:...:::||:.....
  Fly   101 ELRTSKGEKRREYFIKWHGMSYWHCEWIPEGQMLLHHASMVASFQRRSDMEEPSLEELDDQDGNL 165

  Fly   424 KEQAYWRRYAGPEDIDYFECQLELQHELLKSYNNVDRIIAKGSKPDDGTEEYLCKWQSLPYAEST 488
            .|:.|  ||.             ::.|.|.    |.|:|....:|:.|| .||.||:.|.|.:|:
  Fly   166 HERFY--RYG-------------IKPEWLL----VQRVINHSEEPNGGT-MYLVKWRELSYNDSS 210

  Fly   489 WE---------DAALVLRKWQRCAEQFNDRESSKCTPSRHCRVIKYRPKFSRIKNQPEFL-SSGL 543
            ||         :.|:.|.|..|.:.:...|:       |....|....|:   ::||.|| .:||
  Fly   211 WERESDSIPGLNQAIALYKKLRSSNKGRQRD-------RPAPTIDLNKKY---EDQPVFLKEAGL 265

  Fly   544 TLRDYQMDGLNWLLHSWCKENSVILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTA 608
            .|..:|::|::||.:||.:....||||||||||||||:.|||||||..|..||||..|||||:|.
  Fly   266 KLHPFQIEGVSWLRYSWGQGIPTILADEMGLGKTIQTVVFLYSLFKEGHCRGPFLISVPLSTLTN 330

  Fly   609 WQREFDLWAPDMNVVTYLGDIKSRELIQQYEWQF---------ESSKRLKFNCILTTYEIVLKDK 664
            |:||.:||||::..|||:|...:|.:|:::|..|         |:..:.|||.:||:||.:..|.
  Fly   331 WERELELWAPELYCVTYVGGKTARAVIRKHEISFEEVTTKTMRENQTQYKFNVMLTSYEFISVDA 395

  Fly   665 QFLGTLQWAALLVDEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPLQNSLKELWALLHFIMPDKF 729
            .|||.:.||||:|||||||:::.|..::.|.::...::||:|||||||:|:||:.||:|:...||
  Fly   396 AFLGCIDWAALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFHLLNFLSSGKF 460

  Fly   730 DTWENFEVQHGN-AEDKGYTRLHQQLEPYILRRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWI 793
            :..:.|:.:..: ::::...|||:.|||::|||:|.||.||:|.|.|.|:|||::|:||::||.|
  Fly   461 NDLQTFQAEFTDVSKEEQVKRLHEILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHI 525

  Fly   794 LTKNFDALRKGKRGSTSTFLNIVIELKKCCNH---------AALIRPSEFELMGLQQDEALQTLL 849
            |||||.||.:...|...:.|||:::|:|||||         .|.|.||     ||.:   :.:|.
  Fly   526 LTKNFKALNQKGGGRVCSLLNIMMDLRKCCNHPYLFPSAAEEATISPS-----GLYE---MSSLT 582

  Fly   850 KGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGEMRRQALDH 914
            |.||||.||.|:|.:||...||||:||||.:||:||..:|:...:.:.|:||||||::|::|:|.
  Fly   583 KASGKLDLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDR 647

  Fly   915 FNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVT 979
            ||...|:.|.|||||||||||||||||||||||||||||.||:||.:||||:|||.:|.|||.||
  Fly   648 FNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVT 712

  Fly   980 ARSVEEQIVERAKQKMVLDHLVIQRMDTTGRTVLDKSGNGHSSNSNPFNKDDLSAILKFGAEELF 1044
            ..||||:|::.||.||:|.|||:            :.|.|..:.:  |:||:|..||:||.|:||
  Fly   713 HNSVEERIMQVAKHKMMLTHLVV------------RPGMGGMTTN--FSKDELEDILRFGTEDLF 763

  Fly  1045 KDEQ----EHDDDLVCDIDEILRRAETRNEDPEMPADDLLSAFKVASIAAFEEEPSDSVSKQDQN 1105
            ||.:    .:||..|.|   :|.|.....|:.|..|::.||:|||||.|..|    |.....|.|
  Fly   764 KDGKSEAIHYDDKAVAD---LLDRTNRGIEEKESWANEYLSSFKVASYATKE----DHEEHDDYN 821

  Fly  1106 AAGEEDDSKDWDDIIPEGFRKAIDDQERAKEMEDLYLPPRRKTAANQN--EGKRGAGKGGKGKQQ 1168
            ...|..|...|::::.:...|               ||.::|..:.|:  :.:...|||.:.:::
  Fly   822 NDAENTDPFYWENLMGKSQPK---------------LPKKQKKQSQQSQVDVESIMGKGKRIRKE 871

  Fly  1169 ADDS 1172
            .|.|
  Fly   872 IDYS 875

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chd1NP_001245851.1 CHROMO 374..422 CDD:237991 15/61 (25%)
Chromo 458..509 CDD:278797 19/59 (32%)
SNF2_N 548..829 CDD:278600 141/299 (47%)
DEXDc 564..709 CDD:238005 76/153 (50%)
Helicase_C 852..967 CDD:278689 74/114 (65%)
DUF4208 1521..1610 CDD:290618
DUF3824 1795..>1894 CDD:289625
Chd3NP_649111.1 PHD2_CHD_II 37..79 CDD:277007
CHROMO 85..147 CDD:237991 12/45 (27%)
CHROMO 181..233 CDD:214605 18/52 (35%)
SNF2_N 270..561 CDD:278600 140/290 (48%)
DEXDc 288..440 CDD:238005 76/151 (50%)
Helicase_C 585..700 CDD:278689 74/114 (65%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467211
Domainoid 1 1.000 47 1.000 Domainoid score I705
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46623
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45623
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.940

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