DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Chd1 and Hells

DIOPT Version :10

Sequence 1:NP_001245851.1 Gene:Chd1 / 33505 FlyBaseID:FBgn0250786 Length:1900 Species:Drosophila melanogaster
Sequence 2:NP_032260.2 Gene:Hells / 15201 MGIID:106209 Length:821 Species:Mus musculus


Alignment Length:899 Identity:271/899 - (30%)
Similarity:411/899 - (45%) Gaps:212/899 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   321 AATTAATAEEEEKCETI----ERILAQRAGKRGCTGNQTTIYAIEENGFDPHAGFDEKQTPDAET 381
            |..|.|..||||:.|..    ||.:.:.|.|                      .:|.:.|.....
Mouse     8 AVITPAMLEEEEQLEAAGLEKERKMLEEAQK----------------------SWDRESTEIRYR 50

  Fly   382 EAQFLI-KWKGWSYIHNTWESEATLRDMKAKGMKKLDNFIKKEK---------------EQAYWR 430
            ..|.|: |...:|....|...:..|.:.|.|  :||:   ||::               |:...:
Mouse    51 RLQHLLEKSNIYSKFLLTKMEQQQLEEQKKK--EKLE---KKKRSLKLTEGKSLVDGNGEKPVMK 110

  Fly   431 RYAGPEDIDYFECQLELQHELLKSYNNVDRIIAKGSKPDDGTEEYLCKWQSLPYAESTWEDAALV 495
            :..|.||..|...::..:.|:|.        :||  |..|..:|          :.||       
Mouse   111 KKRGREDESYNISEVMSKEEILS--------VAK--KHKDNEDE----------SSST------- 148

  Fly   496 LRKWQRCAEQF-NDRESSKCTPSRHCRVIKYRPK--FSRIK---------NQPEFLSSGLTLRDY 548
               ...|.|.. .:::|:.....|..:.::...|  |..::         .||:..:.|: :|.|
Mouse   149 ---TSLCVEDIQKNKDSNSMIKDRLSQTVRQNSKFFFDPVRKCNGQPVPFQQPKHFTGGV-MRWY 209

  Fly   549 QMDGLNWLLHSWCKENSV--ILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTAWQR 611
            |::|:.||...|  ||.:  |||||||||||:|.|..: :|.....:.||||...||||:..|..
Mouse   210 QVEGMEWLRMLW--ENGINGILADEMGLGKTVQCIATI-ALMIQRGVPGPFLVCGPLSTLPNWMA 271

  Fly   612 EFDLWAPDMNVVTYLGDIKSRELIQQYEWQFESSKRLKFNCILTTYEIVLKDKQFLGTLQWAALL 676
            ||..:.|::..:.|.|..:.|..:.:...:.:.:.:: ...::|::||.::|:..|....|..|:
Mouse   272 EFKRFTPEIPTLLYHGTREDRRKLVKNIHKRQGTLQI-HPVVVTSFEIAMRDQNALQHCYWKYLI 335

  Fly   677 VDEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPLQNSLKELWALLHFIMPDKFDTWENFE----- 736
            |||.||:||....|.:.||.|:.:::||:|||||||:|.|||:||:|::||.||..::||     
Mouse   336 VDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDI 400

  Fly   737 ---------VQHGNAEDKGYTRLHQQLEPYILRRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKW 792
                     :.....|......|||.|.|::|||:|.||...:|.|.|.::...:.:.|:.:|..
Mouse   401 TSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLCNKQEIFYTA 465

  Fly   793 ILTKN----FDALRK----------GKRGSTST-------------------------------- 811
            |:.:.    |.:..|          .||.|..:                                
Mouse   466 IVNRTIANMFGSCEKETVELSPTGRPKRRSRKSINYSELDQFPSELEKLISQIQPEVNRERTVVE 530

  Fly   812 ------------FLNIVIELKKCCNHAALIR------PSEFELMGLQQDEALQTLLKGSGKLVLL 858
                        ..||::.|:|||||..:|.      ..||::     ||.|.|   .|||.::|
Mouse   531 GNIPIESEVNLKLRNIMMLLRKCCNHPYMIEYPIDPVTQEFKI-----DEELVT---NSGKFLIL 587

  Fly   859 DKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGEMRRQALDHFNAEGSQDF 923
            |::|..||:.||:||:||||..|||:|.||...|:|.|.|||||:....|.:.:..||.: ...|
Mouse   588 DRMLPELKKRGHKVLVFSQMTSMLDILMDYCHLRNFIFSRLDGSMSYSEREKNIYSFNTD-PDVF 651

  Fly   924 CFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQIV 988
            .||:|||||||||||..||||||:|||||||:|||||.|.|||||...|.:||||||.:::::||
Mouse   652 LFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIV 716

  Fly   989 ERAKQKMVLDHLVIQRMDTTGRTVLDKSGNGHSSNSNPFNKDDLSAILKF---------GAEELF 1044
            |||..|..|:.|:|.:....|      ..:|.|.:.|..:..:|..:||.         ..|::.
Mouse   717 ERAAAKRKLEKLIIHKNHFKG------GQSGLSQSKNFLDAKELMELLKSRDYEREVKGSREKVI 775

  Fly  1045 KDEQEHDDDLVCDIDEILRRAETRNEDPEMPADDLLSAFKVASIAAFEEEPSDS 1098
            .||   |.:|:.|..:::.:.:.     ..|.......||:.      |...||
Mouse   776 SDE---DLELLLDRSDLIDQMKA-----SRPIKGKTGIFKIL------ENSEDS 815

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chd1NP_001245851.1 CD1_tandem_CHD1-2_like 339..421 CDD:349313 15/82 (18%)
CD2_tandem 454..508 CDD:349306 9/54 (17%)
PLN03142 531..>1066 CDD:215601 219/632 (35%)
CDH1_2_SANT_HL1 1205..1298 CDD:465731
DUF4208 1521..1610 CDD:464035
HellsNP_032260.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 78..120 10/46 (22%)
DEXHc_HELLS_SMARCA6 203..436 CDD:350767 88/237 (37%)
PLN03142 204..>781 CDD:215601 215/599 (36%)
helicase domain I 226..238 9/11 (82%)
helicase domain Ia 258..266 4/7 (57%)
helicase domain II 334..341 4/6 (67%)
helicase domain III 363..370 5/6 (83%)
helicase domain IV 429..439 5/9 (56%)
helicase domain IVa 547..559 6/11 (55%)
'helicase domain IVb 602..609 5/6 (83%)
helicase domain V 655..668 11/12 (92%)
helicase domain VI 686..693 4/6 (67%)
Blue background indicates that the domain is not in the aligned region.

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