DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Chd1 and Chd9

DIOPT Version :9

Sequence 1:NP_001245851.1 Gene:Chd1 / 33505 FlyBaseID:FBgn0250786 Length:1900 Species:Drosophila melanogaster
Sequence 2:NP_001297459.1 Gene:Chd9 / 109151 MGIID:1924001 Length:2885 Species:Mus musculus


Alignment Length:2303 Identity:593/2303 - (25%)
Similarity:915/2303 - (39%) Gaps:658/2303 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 HLKPDKSKQFDPGC------RALNESANSIGSDEQDDTREEANGTDHSGSGSGSGSSGSDSDSDS 64
            |:.|....|...|.      :||::.|.|.........::|.  |.|..:.:.|.:|.:.....|
Mouse   278 HVSPSSLLQSSAGLAPGHTNQALSDFAGSNSFSPHRGMKQEP--TQHLLNPTPSLNSNNFQILHS 340

  Fly    65 S--SGNSSDGRSS------PEPEDKSLSVAGFPPTAAAAQADSKTNGFTDDQE------DSSSDG 115
            |  .||.|:.:.|      |:|.|....|..|...|       :||||:..:|      ||.::.
Mouse   341 SHPQGNYSNSKLSPVHMNFPDPVDAGPPVGHFNDHA-------ETNGFSSLEENLLHHVDSHAEP 398

  Fly   116 SSGSDSDS----------DAEGPSDQRNQS------INNANTSSSLPKPEQNEEEDNETEAG--- 161
            .:|.|.:.          | |.|..|.|.:      ::...||..:.:|....:...:.:|.   
Mouse   399 FAGLDPEDLLQEGLLPQFD-ESPFGQDNSNHVLDHDLDRQFTSHLVSRPSDMAQTQLQYQARGWP 462

  Fly   162 ------------------QQQPASDASAD---------------------------ESSDSSAN- 180
                              |:||.|...:|                           ||....|| 
Mouse   463 SPLSTNHQHLHSRNHLCLQRQPPSSKKSDGSGTYTKLQNTQVRVMSEKKPRKRVESESKQEKANR 527

  Fly   181 --------------------VSPTSSSSSSEEEEEDYRPKR------TRQARKPPTAAEKSKKAP 219
                                :||.:..|:|.|.:|:.|.:|      .|..:||.|.::..:|..
Mouse   528 IISEAIARAKERGERNIPRVMSPENFPSASVEGKEEKRGRRMKSKPKDRDNKKPKTYSKLKEKTK 592

  Fly   220 --------APKNKKKTWDSDESDESEDSDDEVSTAQKRKPAATTSRSKLAQQQQRRRVKPFSSED 276
                    ..|:|::          .:|.||:|.|::|     :..:...|..|:||        
Mouse   593 IGKLIITLGKKHKRR----------NESSDELSDAEQR-----SQHTFKEQHSQKRR-------- 634

  Fly   277 SDDDDASKRCATRRKGAAVSYKEASEDEATDSEDLLEFEYDES-----QAATTAATAEEEEKCET 336
                  |.|...|:|.|..:..:.||:|...|   |..:.:.:     |..........||....
Mouse   635 ------SNRQIKRKKYAEDAEGKQSEEEVKGS---LRVKRNSAPPPGEQPLQLFVENPSEEDAAI 690

  Fly   337 IERILAQRAGKRGCTGNQTTIYAIEENGFDPHAGFDEKQTPDAETEAQFLIKWKGWSYIHNTWES 401
            :::|||.|..|:..:..  .:..|||                      |.:|:|.:||:|..|.:
Mouse   691 VDKILACRTVKKEVSPG--VMLDIEE----------------------FFVKYKNYSYLHCEWAT 731

  Fly   402 EATLRDMKAKGM-KKLDNFIKKEKEQAYWRRYAGPEDIDYFECQLELQHELLKSYNNVDRIIAKG 465
            |..|  :|.|.: :|:..|..::.::|            :|...:| :......|..||||:...
Mouse   732 EQQL--LKDKRIQQKIKRFKLRQAQRA------------HFLADME-EEPFNPDYVEVDRILEVS 781

  Fly   466 SKPDDGTEE----YLCKWQSLPYAESTWE-----DAALVLRKWQRCAEQFNDRESSKCTPSRHCR 521
            ...|..|.|    ||.||.||||.:||||     |.|.:        |:|...::|: ..:||..
Mouse   782 FCEDKDTGESVIYYLVKWCSLPYEDSTWELKEDVDLAKI--------EEFEQLQASR-PDTRHLD 837

  Fly   522 VIKYRPK---FSRIKNQPEFLSSGLTLRDYQMDGLNWLLHSWCKENSVILADEMGLGKTIQTICF 583
                ||.   :.:|:...|: .:|..||:||::||||||.:|....:.|||||||||||||:|.|
Mouse   838 ----RPPSNIWKKIEQSREY-KNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITF 897

  Fly   584 LYSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAPDMNVVTYLGDIKSRELIQQYEWQFESSK-- 646
            ||.:. :..:.||||.:.||||:..|:|||..|. |:|||.|.|.:.||::|||||..|..|:  
Mouse   898 LYEIL-LTGIRGPFLIIAPLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQGR 960

  Fly   647 ----RLKFNCILTTYEIVLKDKQFLGTLQWAALLVDEAHRLKNDDSLLYKSLKEFDTNHRLLITG 707
                ..:|..|:||:|::|.....|..:.|..:::||||||||.:..|.:.||..:..|::|:||
Mouse   961 IIRGAYRFQAIITTFEMILGGCGELNAIDWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTG 1025

  Fly   708 TPLQNSLKELWALLHFIMPDKFDTWENFEVQHGNAE-DKGYTRLHQQLEPYILRRVKKDVEKSLP 771
            |||||:::||::||||:.|.:|.:...|..:.|:.: ::...:|...|:|.:|||:|:||||.|.
Mouse  1026 TPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKKLA 1090

  Fly   772 AKVEQILRVEMTSLQKQYYKWILTKNFDALRKGKRGSTS--TFLNIVIELKKCCNHAALIRPSEF 834
            .|.|.|:.||:|::||:||:.||.|||..|.|| .|.|:  ..:|.::||:|||||..||:.:|.
Mouse  1091 PKEETIIEVELTNIQKKYYRAILEKNFSFLSKG-AGQTNVPNLVNTMMELRKCCNHPYLIKGAEE 1154

  Fly   835 ELMG--------LQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQK 891
            :::|        ...|..||.:::.:|||||:||||.::|..||:|||||||||.||:|.|||..
Mouse  1155 KILGEFRDTYNPSASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIH 1219

  Fly   892 RHFPFQRLDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQND 956
            :.:.::|:||.::|.:|:.|:|.|:...|..|.|||.||||||||||..|||.||||||||||||
Mouse  1220 KRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQND 1284

  Fly   957 LQAQARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRMDTTGRTVLDKSGNGHS 1021
            ||||||.|||||...|.:|||||..|.|.::.:||..|:.||..|:|.|  :||       :.:.
Mouse  1285 LQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSM--SGR-------DSNV 1340

  Fly  1022 SNSNPFNKDDLSAILKFGAEELFKDEQEHDDDLVC--DIDEI-LRRAETRNEDPEMPADDLLSAF 1083
            |.....:|.::..:|:.||..... |:|.:....|  |||:| |||.:|...:.|...    |.|
Mouse  1341 SGIQQLSKKEIEDLLRRGAYGAIM-EEEDEGSKFCEEDIDQILLRRTKTITIESEGRG----STF 1400

  Fly  1084 KVASIAAFEEEPSDSVSKQDQNAAGEEDDSKDWD----------DIIPEGFRKAIDDQERAKEME 1138
            ..||..|.......|:           ||...|.          |.| .|....:.|..|.::..
Mouse  1401 AKASFVASGNRTDISL-----------DDPNFWQKWAKKAELDIDTI-SGRNSLVIDTPRIRKQT 1453

  Fly  1139 DLYLPPRRKTAANQNEGKRGAGKGGKGKQQADDSGGDSDYELGSDGSGDDGRPRKR------GRP 1197
            ..:...:.:.|........|..| .|.::..|.|||   |     |..:..|..|.      || 
Mouse  1454 RPFSATKDELAELSEAESEGEEK-PKLRRPCDRSGG---Y-----GRTECFRVEKNLLVYGWGR- 1508

  Fly  1198 TMKEKITGFTDAELRRFIRSYKKFPAPL--HRMEAIACDAELQEKPLAELKRLGEMLHDRCVQFL 1260
                          .|.|.|:.:|...|  |.:|.| |.|.|.                .|:  :
Mouse  1509 --------------WREILSHGRFKRQLNEHDVEVI-CRALLA----------------YCL--I 1540

  Fly  1261 HEHKEEESKTAATD-ETP---------------GAKQRRARATFSVKLGGVSFNAKKL-----LA 1304
            |...:|:.|....| .||               .|...|.|....||....||:.:|.     ..
Mouse  1541 HYRGDEKIKGFIWDLITPTEDGQTRELQNHLGLSAPVPRGRKGKKVKTQTSSFDIQKAEWLRKYN 1605

  Fly  1305 CEQELQP----------LNEIMPSMPEERQQWSFNIKTRA------PVFD-VD------------ 1340
            .||.||.          .|:::     .|.:..:.:|...      .||| ||            
Mouse  1606 PEQLLQDEGYKKHVKHHCNKVL-----LRVRMLYYLKQEVIGNESQKVFDGVDASDIDVWVPEPD 1665

  Fly  1341 --------WGIEEDTKLLCGIYQYGIGSWEQMKLDPTLKLTDKILLNDTRKPQAKQLQTRAEYLL 1397
                    |..:.|..||.|::::|...:..::.||.|...:::...|.:...|:|         
Mouse  1666 HSEVPAAWWDFDADKSLLIGVFKHGYEKYNTIRADPALCFLERVGKPDDKAVAAEQ--------- 1721

  Fly  1398 KIIKKNVELTKGGQRRQRRPRASRANDAKAASQSASSTIDAKPHDGEDAAGD------------- 1449
               :.|..:....:..:.:|..:...|......|:...:.....:|:...||             
Mouse  1722 ---RANDYMDGDVEDPEYKPAPAIFKDDIEDDVSSPGDLVIADGEGQLMEGDKVYWPTPSALTTR 1783

  Fly  1450 --------ARTVAESSNSQVDPSTASPHNA--PATEQHG-DPAKKAK------------------ 1485
                    .||.......|:.|:.:.|.||  |..|:.. :|...||                  
Mouse  1784 LRRLITAYQRTNKNRHIQQMQPTFSLPANAMQPLYEEATLNPKMAAKIERQQRWTRREEADFYRV 1848

  Fly  1486 ------------------KSKARSKKTSASDNNGNK------PMHFTANNEPRALEVLGDLDPSI 1526
                              |.:|.::....:||:..|      .|.......|...|:   :||:|
Mouse  1849 VSTFGVVFDPDRGQFDWTKFRALARLHKKTDNSLEKYLCAFMSMCRRVCRLPSKEEL---VDPNI 1910

  Fly  1527 FNECKEKMRPV--KKALKALDQPDVSLSDQDQ-LQHTRDCLLQIGKQIDVCLNPYAET------- 1581
            |      ::|:  ::|.:.|.:.::....::| |:|.     |:.:::.:| :|..:.       
Mouse  1911 F------IQPITEERASRTLYRIELLRKVREQALRHP-----QLFERLKLC-HPNPDLPIWWECG 1963

  Fly  1582 ---------EKKEWRSNLWYFVSKFTELD---AKR---------------LFKIYKHALK----- 1614
                     ..|...|...|.:.:..||.   |:|               |.:.|:.||.     
Mouse  1964 SHDRDLLIGAAKHGVSRTDYHILRDPELSFMAAQRNYNQSKAAHSRTSAPLLQQYQVALSASPLT 2028

  Fly  1615 ---QKAGGDG----EAKGKDKGSSGSP----------------AKSKP----NGVTTEEKEKERD 1652
               :..|..|    :.|.|.:..:..|                .||:|    |||.::....:  
Mouse  2029 SLPRLLGAKGTLLEDMKVKSESLTEEPQSSEEESMSSMETRTRVKSEPVSPKNGVLSQATGDQ-- 2091

  Fly  1653 RSGGKKKKKDKDKERSGQARYPETGIPTSGRYADPPLKRKRDENDADASSGLAGAPGGGIGDNLK 1717
            :|||   |.:.|:........|.|..|.|.:   |.:.::..::.:|:.|           |:.:
Mouse  2092 KSGG---KSETDRRMVAARTEPLTPNPASKK---PRVHKRGSQSSSDSDS-----------DSAR 2139

  Fly  1718 SMSFKRLNMDRHEDRKKHHRGPDYYGGSGPPMGSGSYEGGSNSRRQGPTSPST-----------P 1771
            |....|.:..........|........|.....|.|....|:|.....:|.|:           .
Mouse  2140 SSCSSRSSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSEEDVQK 2204

  Fly  1772 RTG---RGGYDPPPAPSGYTPEMERWQSRDRYSQDYKRDRYDGYGRSGGG--------QGSYHRE 1825
            |.|   |..||.....|..|            :||..:|.:    ::..|        ||.|...
Mouse  2205 REGTPHRKAYDEESVASLST------------TQDETQDSF----QANNGTPESAYLLQGGYMLA 2253

  Fly  1826 RDRRPEKR----------------RYPSGLPPHPYSSHY---LPPNYYGLPNGAVPGLPPPSSVY 1871
            ....|:.|                ::||.      ..||   ...::|.......||        
Mouse  2254 ASYWPKDRVMINRLDSICQTVLKGKWPSA------RRHYDANTVASFYTTKLLDSPG-------- 2304

  Fly  1872 RSDPRGYPVMPRDYPADYRRSDYERRTQ 1899
            .:..||.|.:|.. ||...|.::|:..|
Mouse  2305 AATERGEPSVPTP-PAVAVREEHEQSAQ 2331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chd1NP_001245851.1 CHROMO 374..422 CDD:237991 13/48 (27%)
Chromo 458..509 CDD:278797 23/59 (39%)
SNF2_N 548..829 CDD:278600 132/289 (46%)
DEXDc 564..709 CDD:238005 68/150 (45%)
Helicase_C 852..967 CDD:278689 73/114 (64%)
DUF4208 1521..1610 CDD:290618 21/125 (17%)
DUF3824 1795..>1894 CDD:289625 23/125 (18%)
Chd9NP_001297459.1 ROM1 158..>362 CDD:227709 20/85 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 173..195
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 242..263
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 283..347 14/65 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 479..677 45/229 (20%)
PTZ00121 <510..>765 CDD:173412 66/325 (20%)
CD1_tandem_CHD5-9_like 685..749 CDD:349315 22/89 (25%)
CD2_tandem_CHD5-9_like 769..827 CDD:349310 24/65 (37%)
PLN03142 858..>1479 CDD:215601 269/650 (41%)
DEXHc_CHD9 859..1080 CDD:350819 98/222 (44%)
LXXLL motif 1 867..871 3/3 (100%)
DEAH box 996..999 2/2 (100%)
LXXLL motif 2 1035..1039 1/3 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1460..1484 4/24 (17%)
LXXLL motif 3 2030..2034 0/3 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2046..2238 41/226 (18%)
Binds A/T-rich DNA. /evidence=ECO:0000250 2331..2471 1/1 (100%)
A.T hook-like 2428..2435
BRK 2472..2512 CDD:369408
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2473..2494
BRK 2546..2590 CDD:197800
LXXLL motif 4 2710..2714
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2724..2770
LXXLL motif 5 2782..2787
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2818..2885
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0384
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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