DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3165 and SDN1

DIOPT Version :10

Sequence 1:NP_608732.1 Gene:CG3165 / 33503 FlyBaseID:FBgn0031484 Length:351 Species:Drosophila melanogaster
Sequence 2:NP_190579.2 Gene:SDN1 / 824172 AraportID:AT3G50100 Length:409 Species:Arabidopsis thaliana


Alignment Length:259 Identity:57/259 - (22%)
Similarity:99/259 - (38%) Gaps:58/259 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 VVDPEAERITGLSNYLLERESQLDTDAAQLIVSFLKHLPSPVCLVAHNGWGFDFPILRQAFEKLN 151
            |||...: |||::...:|..|....|..:.:..||.   :...||.|:        |.:..|.|.
plant   181 VVDYRTD-ITGITAEDIENASLSVVDIQETLQPFLS---TGTILVGHS--------LNRDLEVLK 233

  Fly   152 IELPQSLTCVDSLRAFMEIDDTQQKETSQLKVP---NDVQEIIP-ELKPKQNTETCLKEPEAVVN 212
            |:.|:   .:|:...|      :...|.:|:.|   |..:.|:. |::.......|:.:..|.:.
plant   234 IDHPK---VIDTALVF------KYPNTRKLRRPSLNNLCKSILGYEVRKTGVPHDCVHDASAAMK 289

  Fly   213 IDW---RTRNETTPNRPILKPTEAFAKRKLLRDGDEDDLEEQTPPKRKPDEFRSRRQLFSGCKCA 274
            :..   ..|.:||     :||:      |.:.:.::..|.....|...|.|  ...|:.||....
plant   290 LALAVVEKRVDTT-----IKPS------KEMLEVEKAKLFLHKIPNNVPSE--ELEQVLSGKFTL 341

  Fly   275 ENKRYPPRGVYNLESLYTRIFKIPALSAHQAEADVVMTTKLIQHYGIDFLAFAEEQAIPFQQVV 338
            :.|:...:|.|     |...    ||.....:||     :..:|  ||.:...:...:| |:||
plant   342 DVKQAKTQGRY-----YCAF----ALFHSSEDAD-----QAFEH--IDGIEMTDSLGLP-QKVV 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3165NP_608732.1 TREX1_2 20..173 CDD:99839 21/85 (25%)
SDN1NP_190579.2 REX1_like 141..292 CDD:99848 29/131 (22%)
RRM_SF 317..377 CDD:409669 18/77 (23%)

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