DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3165 and PAN2

DIOPT Version :10

Sequence 1:NP_608732.1 Gene:CG3165 / 33503 FlyBaseID:FBgn0031484 Length:351 Species:Drosophila melanogaster
Sequence 2:NP_610427.2 Gene:PAN2 / 35893 FlyBaseID:FBgn0033352 Length:1241 Species:Drosophila melanogaster


Alignment Length:197 Identity:37/197 - (18%)
Similarity:63/197 - (31%) Gaps:77/197 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAPNDAVAEHAEEQPKISTFAVLDLETTNLPAYRNNRVSITELCIYAFEAALLKKKKKEQDQDEQ 65
            :|.|.:...|.::..:...|.      |.|....::..||...|         ::.||....::.
  Fly   701 LACNLSYPNHIKDSDQYFNFG------TILKRSLSSEKSIQAFC---------ERCKKFSPTNQS 750

  Fly    66 QELPAAPRVLHKLNVLFQPSMVVDPEAERITGLSNYLLERESQLDTDAAQLIVSFLKHLPSPVCL 130
            .::.:.|::| .:|                .||:|   |::           ::|||..      
  Fly   751 VKVTSLPQIL-SIN----------------CGLNN---EKD-----------ITFLKRQ------ 778

  Fly   131 VAHNGWGFDFPILRQAFEKLNIELPQSLT----------CVDSLRAFMEIDDTQQKETSQLKVPN 185
                        |.:..||..::...||:          |..|...||..|......|||   ||
  Fly   779 ------------LNRCSEKTTVDAAASLSTSKPCRYGANCSRSDCHFMHPDRKSPSHTSQ---PN 828

  Fly   186 DV 187
            .|
  Fly   829 AV 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3165NP_608732.1 TREX1_2 20..173 CDD:99839 28/162 (17%)
PAN2NP_610427.2 WD40 63..>270 CDD:475233
WD40 repeat 148..183 CDD:293791
WD40 repeat 187..221 CDD:293791
WD40 repeat 227..273 CDD:293791
WD40 repeat 278..314 CDD:293791
UCH_1 505..940 CDD:463872 37/197 (19%)
zf-CCCH_2 799..816 CDD:464217 4/16 (25%)
PAN2_exo 1036..1209 CDD:99846
Blue background indicates that the domain is not in the aligned region.

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