DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3165 and Rexo5

DIOPT Version :9

Sequence 1:NP_001285571.1 Gene:CG3165 / 33503 FlyBaseID:FBgn0031484 Length:351 Species:Drosophila melanogaster
Sequence 2:XP_038934563.1 Gene:Rexo5 / 309036 RGDID:1305412 Length:846 Species:Rattus norvegicus


Alignment Length:343 Identity:75/343 - (21%)
Similarity:118/343 - (34%) Gaps:143/343 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 EQPKISTFAVLDLETTNLP-----AYRNNRVSITELCIYAFEAALLKKKKKEQDQDEQQELPAAP 72
            |.|.||......::..|.|     .|:|  ||:|. |:      |.|::.|              
  Rat   151 EGPLISATLKSSIDLQNDPIIQKYGYKN--VSLTR-CL------LTKEEMK-------------- 192

  Fly    73 RVLHKLNVLFQPSMVVDPEAERITGLSNYLLERESQLDTDAAQL--------IVSFLKHLPSPVC 129
                    .|...:...|..|      |::|.:.|...||::.|        :.|..|.| :.:.
  Rat   193 --------TFHFPLQGSPNCE------NFILLKYSGFITDSSPLFGLDCEVCLTSMGKEL-TRIS 242

  Fly   130 LVAHNGWGFDFPILRQAFEKLNIELPQSLTCVDSLRAFMEIDDTQQKE-----TSQLKVPNDVQE 189
            |||..|:.....:::..|:.|           |.|.:|..|    .||     |::||   |||:
  Rat   243 LVAEGGYCLMDELVKPDFKIL-----------DYLTSFSGI----TKEILNPVTTKLK---DVQK 289

  Fly   190 IIPELKPKQNTETCLKEPEAV-----VNIDWRTRNETTPNRPILKPTEAFA-KRKLLRDGDE--- 245
            ::.||.|          |:||     :::|.|          :||....:. ...||..|.:   
  Rat   290 LLRELLP----------PDAVLVGHCLDLDLR----------VLKIIHPYVIDTSLLYIGKQGRR 334

  Fly   246 ------------DDLEEQTPPKRKPDEFRSRR------QLFSGCKCAENKRYPPRGV--YNLESL 290
                        .|:  |.|.|...|.....|      |.|        .:|.|:.:  :|||  
  Rat   335 FKLTFLAKVILGKDI--QCPNKLGHDGIEDARTALELVQYF--------LKYGPKKIAEFNLE-- 387

  Fly   291 YTRIFKIPALSAHQAEAD 308
                    ||:|:|.:.:
  Rat   388 --------ALAANQEQGN 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3165NP_001285571.1 DnaQ 19..>155 CDD:223916 29/148 (20%)
TREX1_2 20..173 CDD:99839 33/165 (20%)
Rexo5XP_038934563.1 REX1_like 223..371 CDD:99848 40/188 (21%)
RRM_SF 508..578 CDD:418427
RRM_SF 604..674 CDD:418427
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0847
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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