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Protein Alignment CG3165 and Trex1

DIOPT Version :9

Sequence 1:	NP_001285571.1	Gene:	CG3165 / 33503	FlyBaseID:	FBgn0031484	Length:	351	Species:	Drosophila melanogaster
Sequence 2:	NP_001012236.1	Gene:	Trex1 / 22040	MGIID:	1328317	Length:	314	Species:	Mus musculus

Alignment Length:	331	Identity:	86/331 - (25%)
Similarity:	122/331 - (36%)	Gaps:	109/331 - (32%)

- Green bases have known domain annotations that are detailed below.

  Fly    17 ISTFAVLDLETTNLPAYRNNRVSITELCIYAFEAALLKKKKKEQDQDEQQELPAAPRVLHKLNVL 81
            :.|...||||.|.||   ::|..:||||:.|.....|  :.....|.....:|..|||:.||::.
Mouse    11 MQTLIFLDLEATGLP---SSRPEVTELCLLAVHRRAL--ENTSISQGHPPPVPRPPRVVDKLSLC 70

  Fly    82 FQPSMVVDPEAERITGLSNYLLERE--SQLDTDAAQLIVSFLKHLPSPVCLVAHNGWGFDFPILR 144
            ..|.....|.|..|||||...||.:  .:.|.:.|.|:.:||:..|.|.|||||||..:|||:|:
Mouse    71 IAPGKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQ 135

  Fly   145 QAFEKLNIELPQSLT-CVDSLRAFMEIDDTQQKETSQLKVPNDVQEIIPELKPKQNTETCLKEPE 208
            ....:|:...|...| ||||:.|              ||.
Mouse   136 TELARLSTPSPLDGTFCVDSIAA--------------LKA------------------------- 161

  Fly   209 AVVNIDWRTRNETTPNRPILKPTEAFAKRKLLRDGDEDDLEEQTPPKRKPDEFRSRRQLFSGCKC 273
                                                   ||:.:.|...    .||:.
Mouse   162 ---------------------------------------LEQASSPSGN----GSRKS------- 176

  Fly   274 AENKRYPPRGVYNLESLYTRIFKIPALSAHQAEADVVMTTKLIQHYGIDFLAFAEEQAIPFQQVV 338
                       |:|.|:|||::......:|.||.||:....:.|......|.:.:|.|.||..|.
Mouse   177 -----------YSLGSIYTRLYWQAPTDSHTAEGDVLTLLSICQWKPQALLQWVDEHARPFSTVK 230

  Fly   339 PL-GSP 343
            |: |:|
Mouse   231 PMYGTP 236

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.