DRSC/TRiP Functional Genomics Resources

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Protein Alignment gammaTub23C and tuba8l5

DIOPT Version :9

Sequence 1:NP_476804.1 Gene:gammaTub23C / 33501 FlyBaseID:FBgn0260639 Length:475 Species:Drosophila melanogaster
Sequence 2:NP_001161759.1 Gene:tuba8l5 / 792024 ZFINID:ZDB-GENE-100921-8 Length:477 Species:Danio rerio


Alignment Length:462 Identity:145/462 - (31%)
Similarity:244/462 - (52%) Gaps:29/462 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 EIITLQLGQCGNQIGFEFWKRLCLEHGISPSGVL--EDFANDGLDRKDVFFYQADDDHYIPRAVL 66
            |.|::.:||.|.|||...|:..||||||.|.|.:  :.....|.|..:.||.:.....::|||:.
Zfish    31 ECISVHVGQAGAQIGNACWELYCLEHGIQPDGQMPSDRSIGGGDDSFNTFFSETASGKHVPRAIF 95

  Fly    67 LDLEPRVINTIMGSVYSKLYNPENVYLSKHGGGAGNNWASG-YSQGEKLQEEVFDIIDREADGSD 130
            :||||.||:.:....|.:|::||.:...|.  .|.||:|.| |:.|:::.:.|.|.|.:.:|...
Zfish    96 VDLEPTVIDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIIDSVLDRIRKLSDQCT 158

  Fly   131 SLEGFILCHSIAGGTGSGMGSFIMERLADRYPKKLIQTFSVFPNQDEISDVVVQPYNSMLTLKRL 195
            .|:||::.||..||||||..|.:||||:..|.||....|:::| ..::|..||:||||:||....
Zfish   159 GLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYP-APQVSTAVVEPYNSILTTHTT 222

  Fly   196 TTAADSVVVLDNTALNRIACDRLHIQNPSFSQINNLVSTIMSVSTTTLRYPSYMNNNLIGLTAPL 260
            ...:|...::||.|:..|....|.|:.|:::.:|.|:..|:|..|.:||:...:|.:|......|
Zfish   223 LEHSDCAFMVDNEAIYDICRKNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 287

  Fly   261 IPTPQLHFLMTGYTPLTSDSDIHTQQLVNVRKTTVLDVMRRLLQPKNMMVSTGPDKSNHHCYISI 325
            :|.|::||.:..|.|:.|....:.:||      :|.|:.....:|.|.||...|   .|..|::.
Zfish   288 VPYPRIHFPLATYAPVISAEKAYHEQL------SVADITNACFEPSNQMVKCDP---RHGKYMAC 343

  Fly   326 LNIIQGEVDPTQVHKSLQRIRDRKMAQFIPWGPTSIQVALSRSSPYVQSNHRVSGL-----MLAN 385
            ..:.:|:|.|..|:.::..|:.::..||:.|.||..:|.::...|.|.....::.:     ||:|
Zfish   344 CLLYRGDVVPKDVNSAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSN 408

  Fly   386 HTSICSLFERALNQYDKLRKRGAFLDQFRREDIFKDDLNELDESRETVDCLVQEYE------AAT 444
            .|:|...:.|..:::|.:..:.||:..:..|.:   :..|..|:||.:..|.::||      ...
Zfish   409 TTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDLAALEKDYEEVGTDSIGD 470

  Fly   445 REDYMQF 451
            .||.::|
Zfish   471 DEDGVEF 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gammaTub23CNP_476804.1 PLN00222 1..451 CDD:215108 144/460 (31%)
gamma_tubulin 4..440 CDD:276957 140/443 (32%)
tuba8l5NP_001161759.1 PTZ00335 30..474 CDD:185562 143/457 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5023
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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