DRSC/TRiP Functional Genomics Resources

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Protein Alignment gammaTub23C and tuba5

DIOPT Version :9

Sequence 1:NP_476804.1 Gene:gammaTub23C / 33501 FlyBaseID:FBgn0260639 Length:475 Species:Drosophila melanogaster
Sequence 2:NP_001015934.1 Gene:tuba5 / 548688 XenbaseID:XB-GENE-5788469 Length:449 Species:Xenopus tropicalis


Alignment Length:446 Identity:139/446 - (31%)
Similarity:238/446 - (53%) Gaps:23/446 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 EIITLQLGQCGNQIGFEFWKRLCLEHGISPSGVL--EDFANDGLDRKDVFFYQADDDHYIPRAVL 66
            |.|::.:||.|.|||...|:..||||||.|.|.:  :.....|.|..:.||.:.....::||||.
 Frog     3 ECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF 67

  Fly    67 LDLEPRVINTIMGSVYSKLYNPENVYLSKHGGGAGNNWASG-YSQGEKLQEEVFDIIDREADGSD 130
            :|||..||:.:....|.:|::||.:...|.  .|.||:|.| |:.|:::.:.|.:.:.:.||...
 Frog    68 VDLESAVIDEVRNGTYRQLFHPEQLITGKE--DAANNYARGHYTVGKEIIDLVLERVRKLADQCT 130

  Fly   131 SLEGFILCHSIAGGTGSGMGSFIMERLADRYPKKLIQTFSVFPNQDEISDVVVQPYNSMLTLKRL 195
            .|:||::.||..||||||..|.:||||:..|.||....|:::| ..::|..||:||||:||....
 Frog   131 GLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYP-APQVSTAVVEPYNSILTTHTT 194

  Fly   196 TTAADSVVVLDNTALNRIACDRLHIQNPSFSQINNLVSTIMSVSTTTLRYPSYMNNNLIGLTAPL 260
            ...:|...::||.|:..|....|.|:.|:::.:|.|:..|:|..|.:||:...:|.:|......|
 Frog   195 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259

  Fly   261 IPTPQLHFLMTGYTPLTSDSDIHTQQLVNVRKTTVLDVMRRLLQPKNMMVSTGPDKSNHHCYISI 325
            :|.|::||.:..|:|:.|....:.:||      :|.::.....:|.|.||...|   .|..|::.
 Frog   260 VPYPRIHFPLVTYSPIISAEKAYHEQL------SVSEITNACFEPSNQMVKCDP---RHGKYMAC 315

  Fly   326 LNIIQGEVDPTQVHKSLQRIRDRKMAQFIPWGPTSIQVALSRSSPYVQSNHRVSGL-----MLAN 385
            ..:.:|:|.|..|:.::..|:.::..||:.|.||..:|.::...|.......::.:     ||:|
 Frog   316 CMLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRAVCMLSN 380

  Fly   386 HTSICSLFERALNQYDKLRKRGAFLDQFRREDIFKDDLNELDESRETVDCLVQEYE 441
            .|:|...:.|..:::|.:..:.||:..:..|.:   :..|..|:||.:..|.::||
 Frog   381 TTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDLAALEKDYE 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gammaTub23CNP_476804.1 PLN00222 1..451 CDD:215108 139/446 (31%)
gamma_tubulin 4..440 CDD:276957 137/443 (31%)
tuba5NP_001015934.1 PTZ00335 1..448 CDD:185562 139/446 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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