DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rrp1 and AT5G57120

DIOPT Version :10

Sequence 1:NP_001137776.1 Gene:Rrp1 / 33500 FlyBaseID:FBgn0004584 Length:706 Species:Drosophila melanogaster
Sequence 2:NP_200522.1 Gene:AT5G57120 / 835816 AraportID:AT5G57120 Length:330 Species:Arabidopsis thaliana


Alignment Length:271 Identity:67/271 - (24%)
Similarity:105/271 - (38%) Gaps:70/271 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   200 GTISKEKVQKAETAAKRARGT--------------KRLADSEIAAA---LDEPEVDEVPPKAASK 247
            |..||....::|..|...|..              |.|:::||...   ...|:::|:..:..:|
plant     2 GNESKTSALESEQKALLLRSVAQYLERCGFSKCFKKLLSEAEIEKKELNTSLPDLEEIFSEFLNK 66

  Fly   248 R----AKKGKMVEPSPETVGDFQSVQEEVESPPKTAAAPKKRAKKTTNGETAVELEPKTKAKPT- 307
            |    |..|...          .:|.|.||:       .||..||..|.||.||:..:.|.|.| 
plant    67 RDHEAAANGNTE----------ANVVEAVEN-------VKKDKKKKKNKETKVEVTEEEKVKETD 114

  Fly   308 --------KQRAKKEGKEPAPGKKQKKSADKENGVVEEEAKPSTETKPAKGRKKAPVKAEDVEDI 364
                    :::.|||.|.....:::.|..|   .|:|:..|   |.|..|.:.|:....:|.|.:
plant   115 AVIEDGVKEKKKKKETKVKVTEEEKVKETD---AVIEDGVK---EKKKKKSKSKSVEADDDKEKV 173

  Fly   365 EEAAEESKPARGRKKAAAKAEEPDVDEES----GSKSMLAEQSGCGGAAVLKSLQTMLNFCFPAT 425
            .:..:.|:|..      .|.|..|.||||    ..::::....|.....| |..:|..|      
plant   174 SKKRKRSEPEE------TKEETEDDDEESKRRKKEENVVENDEGVQETPV-KETETKEN------ 225

  Fly   426 KKAKKAETKTT 436
            ..|:|:|||:|
plant   226 GNAEKSETKST 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rrp1NP_001137776.1 PTZ00121 <8..396 CDD:173412 56/229 (24%)
Ape1-like_AP-endo 454..704 CDD:197321
AT5G57120NP_200522.1 LisH 13..46 CDD:128913 7/32 (22%)
SRP40_C 253..323 CDD:461525
Blue background indicates that the domain is not in the aligned region.

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