DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rrp1 and ARP

DIOPT Version :9

Sequence 1:NP_001137776.1 Gene:Rrp1 / 33500 FlyBaseID:FBgn0004584 Length:706 Species:Drosophila melanogaster
Sequence 2:NP_181677.1 Gene:ARP / 818744 AraportID:AT2G41460 Length:536 Species:Arabidopsis thaliana


Alignment Length:485 Identity:159/485 - (32%)
Similarity:227/485 - (46%) Gaps:99/485 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   312 KKEGKEPAPGKKQK-----KSADK-ENGVVEEEAKP----------STETK---PAKGRKK---A 354
            :||.|.|.....|.     ...|: |.|.::::.|.          ||..|   |.||||:   :
plant    61 RKELKIPGAAIDQNCHQMGSDTDRDEMGTLQDDRKEIEAMTVQELRSTLRKLGVPVKGRKQELIS 125

  Fly   355 PVKAEDVEDIEEAAEESKPARGR----KKAAAKAEEPDVDE-----------------ESGSKSM 398
            .::.....::.:..|.|...|..    |:..:..|||..||                 :|..|::
plant   126 TLRLHMDSNLPDQKETSSSTRSDSVTIKRKISNREEPTEDECTNSEAYDIEHGEKRVKQSTEKNL 190

  Fly   399 LAEQSGCGGAAVLKSLQTMLNFCFPATKKAK---KAETKTTVTLD----KDAFALPADKE----- 451
            .|:.|   ..|:.|..::::.     |.|.:   |.||.:|::.:    ::..:.|:..|     
plant   191 KAKVS---AKAIAKEQKSLMR-----TGKQQIQSKEETSSTISSELLKTEEIISSPSQSEPWTVL 247

  Fly   452 -----------FN---------------LKICSWNVAGLRAWLKKD---GLQLIDLEEPDIFCLQ 487
                       :|               :|:.:|||.|||..||.:   .|||...|..||.|||
plant   248 AHKKPQKDWKAYNPKTMRPPPLPEGTKCVKVMTWNVNGLRGLLKFESFSALQLAQRENFDILCLQ 312

  Fly   488 ETKCANDQLPE-EVTRLPGY-HPYWLCMPG--GYAGVAIYSKIMPIHVEYGIGNEEFDDVGRMIT 548
            |||.....:.| :.|.:.|| |.:|.|...  ||:|.||.|:|.|:.|.||.|....|..||::|
plant   313 ETKLQVKDVEEIKKTLIDGYDHSFWSCSVSKLGYSGTAIISRIKPLSVRYGTGLSGHDTEGRIVT 377

  Fly   549 AEYEKFYLINVYVPNSGRKLVNLEPRM-RWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENP 612
            ||::.|||||.||||||..|..|..|: .|::....::|:|:..||||:.||:|.:|..||:.||
plant   378 AEFDSFYLINTYVPNSGDGLKRLSYRIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNP 442

  Fly   613 KNNTKNAGFTQEERDKM-TELLGLGFVDTFRHLYPDRKGAYTFWTYMANARARNVGWRLDYCLVS 676
            ..|.::||||.|||... ..||..|||||||..:|...| ||:|.|....|..|.||||||.|||
plant   443 AGNKRSAGFTIEERQSFGANLLDKGFVDTFRKQHPGVVG-YTYWGYRHGGRKTNKGWRLDYFLVS 506

  Fly   677 ERFVPKVVEHEIRSQCLGSDHCPITIFFNI 706
            :.....|.:..|.....|||||||.:...:
plant   507 QSIAANVHDSYILPDINGSDHCPIGLILKL 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rrp1NP_001137776.1 RecX 15..>217 CDD:294607
RR_TM4-6 <314..>388 CDD:283990 22/99 (22%)
Ape1-like_AP-endo 454..704 CDD:197321 118/258 (46%)
ARPNP_181677.1 RR_TM4-6 80..>234 CDD:283990 33/161 (20%)
SAP 97..131 CDD:128789 8/33 (24%)
Ape1-like_AP-endo 277..534 CDD:197321 118/257 (46%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 197 1.000 Domainoid score I895
eggNOG 1 0.900 - - E1_COG0708
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 210 1.000 Inparanoid score I1253
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005771
OrthoInspector 1 1.000 - - oto3990
orthoMCL 1 0.900 - - OOG6_101139
Panther 1 1.100 - - LDO PTHR22748
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5491
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.820

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