DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rrp1 and Nolc1

DIOPT Version :9

Sequence 1:NP_001137776.1 Gene:Rrp1 / 33500 FlyBaseID:FBgn0004584 Length:706 Species:Drosophila melanogaster
Sequence 2:NP_074060.2 Gene:Nolc1 / 64896 RGDID:621578 Length:704 Species:Rattus norvegicus


Alignment Length:426 Identity:109/426 - (25%)
Similarity:177/426 - (41%) Gaps:71/426 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 AVKKQAEALASEPTDPTPNANGNGVDENADSAAEELKVPAKGK--------PRARKATKTAVSAE 62
            |.|||..|.|.......|....:..::::....||.|.|.|.|        |.:...:|.:|.|:
  Rat   253 APKKQVVAKAPVKVTAAPTQKSSSSEDSSSEEEEEQKKPMKKKAGPYSSVPPPSVSLSKKSVGAQ 317

  Fly    63 NSEEVEPQKAPT-----------AAARGKKKQPKDTDENGQMEVVAKPKGRAKKATAEAEPEPKV 116
            :.::...|..|.           :::..:||.|..|..:   :..|||....|||.:.::.....
  Rat   318 SPKKAAAQTQPADSSADSSEESDSSSEEEKKTPAKTVVS---KTPAKPAPVKKKAESSSDSSDSD 379

  Fly   117 DLPAGKATKP-RAKKEPTPAPDEVTSSPPKGRAKAEKPTNAQAKGRKRKELPAEANGGAEEAAEP 180
            ........|| .|.|.|...| .||..||..:|.| .|......|:|.:...|:::...||::. 
  Rat   380 SSEDEAPAKPVSATKSPLSKP-AVTPKPPAAKAVA-TPKQPAGSGQKPQSRKADSSSSEEESSS- 441

  Fly   181 PKQRARKEAVPTLK----EQAEPGTISKEKVQKAETAAKRARGTKRLADSEIAAALDEPEVDEVP 241
            .::.|.|::|.|.|    .:|.|...:|:        |.||.|... :|||.:::.:|.:....|
  Rat   442 SEEEATKKSVTTPKARVTAKAAPSLPAKQ--------APRAGGDSS-SDSESSSSEEEKKTPPKP 497

  Fly   242 PKAASKRAKKGKMVEPSP---------ETVGDFQSVQEEVESPPKTAAAPKKRAKK------TTN 291
            |  |.|:|....:.:|:|         .:....:...||.:..||:.|.||.:|.|      :.|
  Rat   498 P--AKKKAAGAAVPKPTPVKKAAAESSSSSSSSEDSSEEEKKKPKSKATPKPQAGKANGVPASQN 560

  Fly   292 GETAVELEPKTKAKPTKQRAKKEGKEPAPGKKQKKSADKENGVVEEEAK-----PSTETKPAKGR 351
            |:...|.|  .:.:.|:|..|..|.:|..|||:|.:...:.....:..|     |:|..|..||.
  Rat   561 GKAGKESE--EEEEDTEQNKKAAGTKPGSGKKRKHNETADEAATPQSKKVKLQTPNTFPKRKKGE 623

  Fly   352 KKAP-----VKAEDVEDIEEAAEESKPARGRKKAAA 382
            |:|.     |:.|::|.....|:.|..|   |:.||
  Rat   624 KRASSPFRRVREEEIEVDSRVADNSFDA---KRGAA 656

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rrp1NP_001137776.1 RecX 15..>217 CDD:294607 51/225 (23%)
RR_TM4-6 <314..>388 CDD:283990 23/79 (29%)
Ape1-like_AP-endo 454..704 CDD:197321
Nolc1NP_074060.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 65..638 102/403 (25%)
11 X 12 AA approximate repeats of an acidic serine cluster 84..570 83/335 (25%)
PHA03247 <147..561 CDD:223021 79/324 (24%)
SRP40_C 629..701 CDD:398615 9/31 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2992
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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