DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rrp1 and Nolc1

DIOPT Version :10

Sequence 1:NP_001137776.1 Gene:Rrp1 / 33500 FlyBaseID:FBgn0004584 Length:706 Species:Drosophila melanogaster
Sequence 2:NP_074060.2 Gene:Nolc1 / 64896 RGDID:621578 Length:704 Species:Rattus norvegicus


Alignment Length:426 Identity:109/426 - (25%)
Similarity:177/426 - (41%) Gaps:71/426 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 AVKKQAEALASEPTDPTPNANGNGVDENADSAAEELKVPAKGK--------PRARKATKTAVSAE 62
            |.|||..|.|.......|....:..::::....||.|.|.|.|        |.:...:|.:|.|:
  Rat   253 APKKQVVAKAPVKVTAAPTQKSSSSEDSSSEEEEEQKKPMKKKAGPYSSVPPPSVSLSKKSVGAQ 317

  Fly    63 NSEEVEPQKAPT-----------AAARGKKKQPKDTDENGQMEVVAKPKGRAKKATAEAEPEPKV 116
            :.::...|..|.           :::..:||.|..|..:   :..|||....|||.:.::.....
  Rat   318 SPKKAAAQTQPADSSADSSEESDSSSEEEKKTPAKTVVS---KTPAKPAPVKKKAESSSDSSDSD 379

  Fly   117 DLPAGKATKP-RAKKEPTPAPDEVTSSPPKGRAKAEKPTNAQAKGRKRKELPAEANGGAEEAAEP 180
            ........|| .|.|.|...| .||..||..:|.| .|......|:|.:...|:::...||::. 
  Rat   380 SSEDEAPAKPVSATKSPLSKP-AVTPKPPAAKAVA-TPKQPAGSGQKPQSRKADSSSSEEESSS- 441

  Fly   181 PKQRARKEAVPTLK----EQAEPGTISKEKVQKAETAAKRARGTKRLADSEIAAALDEPEVDEVP 241
            .::.|.|::|.|.|    .:|.|...:|:        |.||.|... :|||.:::.:|.:....|
  Rat   442 SEEEATKKSVTTPKARVTAKAAPSLPAKQ--------APRAGGDSS-SDSESSSSEEEKKTPPKP 497

  Fly   242 PKAASKRAKKGKMVEPSP---------ETVGDFQSVQEEVESPPKTAAAPKKRAKK------TTN 291
            |  |.|:|....:.:|:|         .:....:...||.:..||:.|.||.:|.|      :.|
  Rat   498 P--AKKKAAGAAVPKPTPVKKAAAESSSSSSSSEDSSEEEKKKPKSKATPKPQAGKANGVPASQN 560

  Fly   292 GETAVELEPKTKAKPTKQRAKKEGKEPAPGKKQKKSADKENGVVEEEAK-----PSTETKPAKGR 351
            |:...|.|  .:.:.|:|..|..|.:|..|||:|.:...:.....:..|     |:|..|..||.
  Rat   561 GKAGKESE--EEEEDTEQNKKAAGTKPGSGKKRKHNETADEAATPQSKKVKLQTPNTFPKRKKGE 623

  Fly   352 KKAP-----VKAEDVEDIEEAAEESKPARGRKKAAA 382
            |:|.     |:.|::|.....|:.|..|   |:.||
  Rat   624 KRASSPFRRVREEEIEVDSRVADNSFDA---KRGAA 656

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rrp1NP_001137776.1 PTZ00121 <8..396 CDD:173412 108/424 (25%)
Ape1-like_AP-endo 454..704 CDD:197321
Nolc1NP_074060.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 65..638 102/403 (25%)
11 X 12 AA approximate repeats of an acidic serine cluster 84..570 83/335 (25%)
PHA03247 <147..561 CDD:223021 79/324 (24%)
SRP40_C 629..701 CDD:461525 9/31 (29%)
Blue background indicates that the domain is not in the aligned region.

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