Protein Alignment Rrp1 and exo-3

DIOPT Version :10

• Sequence 1: NP_001137776.1
• Gene: Rrp1 / 33500
• FlyBaseID: FBgn0004584
• Length: 706
• Species: Drosophila melanogaster
• Sequence 2: NP_001021584.1
• Gene: exo-3 / 173069
• WormBaseID: WBGene00001372
• Length: 288
• Species: Caenorhabditis elegans
• Alignment Length: 286
• Identity: 135/286 - (47%)
• Similarity: 176/286 - (61%)
• Gaps: 28/286 - (9%)

  Fly   425 TKKAKKAETKTTVTLDKDAFALPADKEFNLK----ICSWNVAGLRAWLKKDGLQLIDLEEPDIFC 485
            |||.|                 ||:::.|.|    :| ||||||||.:||...:.:..||||:..
 Worm    19 TKKVK-----------------PAEEDNNQKSWKFVC-WNVAGLRACVKKSDFKEVLAEEPDLVF 65

  Fly   486 LQETKCANDQLPEEVTRLPGYHPYWLCMP---GGYAGVAIYSKIMPIHVEYGIGNEEFDDVGRMI 547
            |.|||| .:..||.......|....:...   ||||||.:.||..|:.|..|||:.|||..||:|
 Worm    66 LGETKC-KEWPPEMEETFKNYTKTLVVSTEKNGGYAGVGLLSKCAPMKVHKGIGDPEFDTAGRLI 129

  Fly   548 TAEYEKFYLINVYVPNSGRKLVNLEPRMRWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENP 612
            .||:.|||.|..||||||.||||||.|.|||||....:|::|..|||:..||:||:|..|||:||
 Worm   130 IAEFSKFYFIGAYVPNSGAKLVNLEKRGRWEKLLTEKMKEMDEKKPVIYGGDLNVAHNEIDLKNP 194

  Fly   613 KNN-TKNAGFTQEERDKMTELLGLGFVDTFRHLYPDRKGAYTFWTYMANARARNVGWRLDYCLVS 676
            ::| .|.||||.:||...:|:|.|||.||||.::||.| .|:||:|:||:|.::|||||||.:||
 Worm   195 ESNRNKTAGFTDQERGWFSEMLELGFTDTFRAMHPDEK-KYSFWSYLANSRQKDVGWRLDYYVVS 258

  Fly   677 ERFVPKVVEHEIRSQCLGSDHCPITI 702
            .|.:.||...:|.|..:||||.|:.:
 Worm   259 NRIMNKVKRSDIMSSVMGSDHAPVVM 284

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rrp1	NP_001137776.1	PTZ00121	<8..396	CDD:173412
		Ape1-like_AP-endo	454..704	CDD:197321	128/257 (50%)
exo-3	NP_001021584.1	Ape1-like_AP-endo	35..286	CDD:197321	127/253 (50%)