Protein Alignment Rbp9 and PAB1

DIOPT Version :9

• Sequence 1: NP_001259974.1
• Gene: Rbp9 / 33498
• FlyBaseID: FBgn0010263
• Length: 684
• Species: Drosophila melanogaster
• Sequence 2: NP_011092.1
• Gene: PAB1 / 856912
• SGDID: S000000967
• Length: 577
• Species: Saccharomyces cerevisiae
• Alignment Length: 526
• Identity: 130/526 - (24%)
• Similarity: 199/526 - (37%)
• Gaps: 96/526 - (18%)

  Fly    85 NNNTNNNNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQ 149
            |.|..::....||.:.:.:.| :...:|.|..|..::|:..:..:|...|.|.|.::.||.:|..
Yeast    14 NLNIQDDQKQAATGSESQSVE-NSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77

  Fly   150 SLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKV--SIARPSSESIKGANLYVSGLPKNMTQSDL 212
            ||||.:||:...|...|||..||...::.:..::  |...||.......|:::..|..::....|
Yeast    78 SLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKAL 142

  Fly   213 ESLFSPYGKIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNG---------TTP------ 262
            ...||.:|.|::|:|..|. .|.|||.||:.|::...|..||..|||         ..|
Yeast   143 YDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKE 206

  Fly   263 -KNSTEPITVKFAN------NPSSNKNSMQPLAAYIAP-------QNTRG---GRAFPANAAAGA 310
             .:..|.....:.|      |..:.....|.|.|...|       ::..|   |..| .|.....
Yeast   207 RDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGF-VNYEKHE 270

  Fly   311 AAAAAAAAIHPN--------AGRYSSVISRYSPLTSD-----LITNGMIQGNTIASSGWCIFVYN 362
            .|..|..|::.:        .||......|...|...     |......||..       :||.|
Yeast   271 DAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVN-------LFVKN 328

  Fly   363 LAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSLNGYTLGNRVL 427
            |....::..|.:.|.|:|.:.|.||:| .::.|.||||||..:..|||..||...|...:..:.|
Yeast   329 LDDSVDDEKLEEEFAPYGTITSAKVMR-TENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPL 392

  Fly   428 QVSFKTNKNKQTXLLTKLAAVVN------ANAAAAALAA----------------------NGLV 464
            .|:....|:.:. .|.:.....|      |.|||||.||                      ||
Yeast   393 YVAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMFYGVMPPRGVPFNG-- 455

  Fly   465 LHNHHHHSNIGSINNNS---NNSNGCSAAAFPLGKYVNHSSNNRQHNINNST----SNTSKQKPA 522
             .|....:.:|.:..|.   ...||......|.|.:..::::|.|.......    ....|:..|
Yeast   456 -PNPQQMNPMGGMPKNGMPPQFRNGPVYGVPPQGGFPRNANDNNQFYQQKQRQALGEQLYKKVSA 519

  Fly   523 STSNKQ 528
            .|||::
Yeast   520 KTSNEE 525

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rbp9	NP_001259974.1	ELAV_HUD_SF	107..438	CDD:273741	99/377 (26%)
		RRM1_Hu	109..186	CDD:241094	24/78 (31%)
		RRM2_Hu	196..274	CDD:241096	25/93 (27%)
		RRM3_Hu	355..432	CDD:240823	27/76 (36%)
PAB1	NP_011092.1	PABP-1234	38..559	CDD:130689	125/501 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910