DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp9 and shep

DIOPT Version :9

Sequence 1:NP_001259974.1 Gene:Rbp9 / 33498 FlyBaseID:FBgn0010263 Length:684 Species:Drosophila melanogaster
Sequence 2:NP_001246636.1 Gene:shep / 38605 FlyBaseID:FBgn0052423 Length:590 Species:Drosophila melanogaster


Alignment Length:472 Identity:114/472 - (24%)
Similarity:170/472 - (36%) Gaps:156/472 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 QQQQQ------QPSGAGGASGV-----------------------GSTTGSA-----------GG 33
            |||||      |..|.||..||                       ||::.:|           |.
  Fly    12 QQQQQMGGPPHQQQGGGGGGGVSMRGPSNAQQLPPQIPRSQNYSNGSSSSAAAAPLTSRSAFPGA 76

  Fly    34 PATANNVTNSQAQTNGGTTATTTAAAGAG------------------------STTNAAVGQATA 74
            |.||:.|....|........|:.|||.||                        :...|||.|..|
  Fly    77 PLTASAVALKGALPQRPPAMTSPAAAAAGAALAAGAPYRGAASWTPQGYAPAAAAAAAAVAQQAA 141

  Fly    75 -----------------------------------------------------NNAASNNN---- 82
                                                                 |:::|:|.    
  Fly   142 YRYTAPLPQPAYAAYTPHTATTPATTTVSFLSQPVDYYWYGQRVPTAASPSNTNSSSSSNTGSQS 206

  Fly    83 -------NNNNNTNNNNNNNATANNNN--NNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVES 138
                   :|..|||.|...|.|..|.|  ..|...||||.:..|.|..:..::.::...:|.:.|
  Fly   207 GTLSTSLSNTTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIIS 271

  Fly   139 CKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGL 203
            .|.|.||.|.:..|||||::.:...||.|:..|.|..:|.:..|.....|:       |||::.|
  Fly   272 TKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPT-------NLYIANL 329

  Fly   204 PKNMTQSDLESLFSPYGKIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEP 268
            |.:..::|||::.|.||:::::|||.|.... ||||||.|.:.|.:.::.|:..||.|...:.:|
  Fly   330 PPHFKETDLEAMLSKYGQVVSTRILRDQQMN-SKGVGFARMESREKCEQIIQMFNGNTIPGAKDP 393

  Fly   269 ITVKFANNPSSNKN---------------SMQPLAAYIAPQNTRGGRAFPANAAAGAAAAAAAAA 318
            :.||||:.....||               |.:.:.....|...:.|.:.......|...:..:| 
  Fly   394 LLVKFADGGPKKKNLFKTPDPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPIGVPYSRFSA- 457

  Fly   319 IHPNAGRYSSVISRYSP 335
              |..|.|....|::.|
  Fly   458 --PQVGGYPVAGSQWIP 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp9NP_001259974.1 ELAV_HUD_SF 107..438 CDD:273741 70/244 (29%)
RRM1_Hu 109..186 CDD:241094 25/76 (33%)
RRM2_Hu 196..274 CDD:241096 30/77 (39%)
RRM3_Hu 355..432 CDD:240823
shepNP_001246636.1 RRM1_MSSP 243..313 CDD:240689 23/69 (33%)
RRM2_MSSP 322..400 CDD:240690 31/85 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439598
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D614259at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.850

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