DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp9 and fne

DIOPT Version :9

Sequence 1:NP_001259974.1 Gene:Rbp9 / 33498 FlyBaseID:FBgn0010263 Length:684 Species:Drosophila melanogaster
Sequence 2:NP_001096965.1 Gene:fne / 32245 FlyBaseID:FBgn0086675 Length:356 Species:Drosophila melanogaster


Alignment Length:369 Identity:246/369 - (66%)
Similarity:284/369 - (76%) Gaps:42/369 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 NNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVT-------- 147
            |.:.|.:.:.:|:   :.:||||||||||||:|:|:||||.|.||:|||||:||||:        
  Fly    10 NGSANGSVDGSND---ESRTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNLVLPAS 71

  Fly   148 ----------GQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSG 202
                      ||||||||||||:.||||||:|.|||||||||.||||.|||||||||||||||||
  Fly    72 LTALNPALQQGQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSG 136

  Fly   203 LPKNMTQSDLESLFSPYGKIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTE 267
            ||||::|.|||.:|:.:|||||||||||||:||||||||||||||.||:|||:||||.|||...|
  Fly   137 LPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKGYAE 201

  Fly   268 PITVKFANNPSSNKNSM--QPLAAYIAPQNTRGGRAFPANAAAGAAAAAAAAAIHPNAGRYSSVI 330
            |||||||||||::..:.  .||.||:.||             |.||....|.|: |:|||.    
  Fly   202 PITVKFANNPSNSAKAQIAPPLTAYLTPQ-------------AAAATRRLAGAL-PSAGRI---- 248

  Fly   331 SRYSPLTSDLITNGMIQGNTIASSGWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNK 395
             |||||..||:.|.::.||.:..||||||||||||:||||||||||||||||||||||||||::|
  Fly   249 -RYSPLAGDLLANSILPGNAMTGSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSK 312

  Fly   396 CKGFGFVTMTNYEEAVLAIQSLNGYTLGNRVLQVSFKTNKNKQT 439
            ||||||||||||:|||:|||||||||||||||||||||||.|.|
  Fly   313 CKGFGFVTMTNYDEAVVAIQSLNGYTLGNRVLQVSFKTNKTKTT 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp9NP_001259974.1 ELAV_HUD_SF 107..438 CDD:273741 241/350 (69%)
RRM1_Hu 109..186 CDD:241094 62/94 (66%)
RRM2_Hu 196..274 CDD:241096 61/77 (79%)
RRM3_Hu 355..432 CDD:240823 71/76 (93%)
fneNP_001096965.1 ELAV_HUD_SF 23..354 CDD:273741 241/349 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45470238
Domainoid 1 1.000 123 1.000 Domainoid score I5514
eggNOG 1 0.900 - - E1_KOG0145
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 414 1.000 Inparanoid score I1806
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D425303at33208
OrthoFinder 1 1.000 - - FOG0000313
OrthoInspector 1 1.000 - - mtm6531
orthoMCL 1 0.900 - - OOG6_103306
Panther 1 1.100 - - P PTHR10352
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X326
1110.800

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