DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp9 and elav

DIOPT Version :9

Sequence 1:NP_001259974.1 Gene:Rbp9 / 33498 FlyBaseID:FBgn0010263 Length:684 Species:Drosophila melanogaster
Sequence 2:NP_001245447.1 Gene:elav / 31000 FlyBaseID:FBgn0260400 Length:483 Species:Drosophila melanogaster


Alignment Length:464 Identity:233/464 - (50%)
Similarity:287/464 - (61%) Gaps:78/464 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VQQQQQQPSGAGGASGVGSTTGSAGGPATANNVTNSQAQTNGGTTATTTAAAGAGSTTNAAVGQA 72
            |||||.|.:.|..|:.|............|......|.|..           .|.....|||.||
  Fly    64 VQQQQTQQAVAAAAAAVTQQLQQQQQAVVAQQAVVQQQQQQ-----------AAAVVQQAAVQQA 117

  Fly    73 TA---NNAASNNNNNNNNTNNNNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFG 134
            ..   ..|..|.|.|..:.:.|.:|.:|         :.:||||||||||||::|||||||.|.|
  Fly   118 VVPQPQQAQPNTNGNAGSGSQNGSNGST---------ETRTNLIVNYLPQTMTEDEIRSLFSSVG 173

  Fly   135 EVESCKLIRDK-------------VTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIA 186
            |:||.||||||             ..||||||||||||:.:|||:|:|.||||||||||||||.|
  Fly   174 EIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFA 238

  Fly   187 RPSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRIL--CDNITGLSKGVGFIRFDQRFE 249
            ||||::|||||||||||||.|||.:||::|:|:|.|||||||  ..|.| .:|||||||||:|.|
  Fly   239 RPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDT-QTKGVGFIRFDKREE 302

  Fly   250 ADRAIKELNGTTPKNSTEPITVKFANNPSSNKNSMQP-LAAYIAPQNTR--GGRAFPANAAAGAA 311
            |.|||..||||||.:.|:||.|||:|.|.|....:|| |.|::.||..|  ||            
  Fly   303 ATRAIIALNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQLVRRIGG------------ 355

  Fly   312 AAAAAAAIHP--NAGRYSSVISRYSPLTSD----LITNGM----IQGNTIAS---SGWCIFVYNL 363
                  |:|.  |.|     ::|:||:..|    ::.||:    ....|:||   ..:.||:|||
  Fly   356 ------AMHTPVNKG-----LARFSPMAGDMLDVMLPNGLGAAAAAATTLASGPGGAYPIFIYNL 409

  Fly   364 APDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSLNGYTLGNRVLQ 428
            ||:|||..|||||||||||||||:::|..:|:|||:|||:||||:||.:||::|||||:||||||
  Fly   410 APETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQ 474

  Fly   429 VSFKTNKNK 437
            |||||||.|
  Fly   475 VSFKTNKAK 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp9NP_001259974.1 ELAV_HUD_SF 107..438 CDD:273741 208/362 (57%)
RRM1_Hu 109..186 CDD:241094 61/89 (69%)
RRM2_Hu 196..274 CDD:241096 53/79 (67%)
RRM3_Hu 355..432 CDD:240823 54/76 (71%)
elavNP_001245447.1 ELAV_HUD_SF 146..483 CDD:273741 207/360 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 81 1.000 Domainoid score I5464
eggNOG 1 0.900 - - E1_KOG0145
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 253 1.000 Inparanoid score I1971
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D425303at33208
OrthoFinder 1 1.000 - - FOG0000313
OrthoInspector 1 1.000 - - mtm1072
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10352
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X326
98.970

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