DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp9 and ELAVL4

DIOPT Version :9

Sequence 1:NP_001259974.1 Gene:Rbp9 / 33498 FlyBaseID:FBgn0010263 Length:684 Species:Drosophila melanogaster
Sequence 2:XP_011539191.1 Gene:ELAVL4 / 1996 HGNCID:3315 Length:416 Species:Homo sapiens


Alignment Length:384 Identity:223/384 - (58%)
Similarity:265/384 - (69%) Gaps:53/384 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 NNNTNNNNNNNATANNNNNNEP--------DPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKL 141
            :|...:|.:|..::||.|...|        |.|||||||||||.|:|:|.||||.|.||:|||||
Human    49 SNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 113

  Fly   142 IRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGLPKN 206
            :|||:||||||||||||:..:|||||||.|||||||.||||||.|||||.||:.||||||||||.
Human   114 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 178

  Fly   207 MTQSDLESLFSPYGKIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITV 271
            |||.:||.|||.||:|||||||.|.:||:|:||||||||:|.||:.|||.|||..|..:||||||
Human   179 MTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 243

  Fly   272 KFANNPSSNKNSMQPLAAYIAPQNTRGGRAFPANAAAGAAAAAAAAAIHPNAGRY---------- 326
            |||||||...:.......|.:|     .|.:|             ..:|..|.|:          
Human   244 KFANNPSQKSSQALLSQLYQSP-----NRRYP-------------GPLHHQAQRFRLDNLLNMAY 290

  Fly   327 ------------SSVISRYSPLTSDLITN--GM-IQGNTIASSGWCIFVYNLAPDTEENVLWQLF 376
                        |:...|:||:|.|.:|:  || |.|:|  .:|||||||||:||::|:||||||
Human   291 GVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHT--GTGWCIFVYNLSPDSDESVLWQLF 353

  Fly   377 GPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSLNGYTLGNRVLQVSFKTNK 435
            ||||||.:||||||..:||||||||||||||:||.:||.|||||.||:|||||||||||
Human   354 GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp9NP_001259974.1 ELAV_HUD_SF 107..438 CDD:273741 216/354 (61%)
RRM1_Hu 109..186 CDD:241094 61/76 (80%)
RRM2_Hu 196..274 CDD:241096 56/77 (73%)
RRM3_Hu 355..432 CDD:240823 61/76 (80%)
ELAVL4XP_011539191.1 ELAV_HUD_SF 79..415 CDD:273741 216/354 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 121 1.000 Domainoid score I5685
eggNOG 1 0.900 - - E1_KOG0145
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H40729
Inparanoid 1 1.050 419 1.000 Inparanoid score I1806
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D425303at33208
OrthoFinder 1 1.000 - - FOG0000313
OrthoInspector 1 1.000 - - mtm8515
orthoMCL 1 0.900 - - OOG6_103306
Panther 1 1.100 - - O PTHR10352
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X326
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1312.830

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