DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp9 and ELAVL3

DIOPT Version :9

Sequence 1:NP_001259974.1 Gene:Rbp9 / 33498 FlyBaseID:FBgn0010263 Length:684 Species:Drosophila melanogaster
Sequence 2:XP_024307178.1 Gene:ELAVL3 / 1995 HGNCID:3314 Length:424 Species:Homo sapiens


Alignment Length:415 Identity:205/415 - (49%)
Similarity:248/415 - (59%) Gaps:92/415 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 NATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYV 159
            |......|....|.|||||||||||.|:|||.:|||.|.|::|||||:|||:||||||||||||.
Human    24 NGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88

  Fly   160 KQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIIT 224
            ...||:||||.||||:||.||||||.|||||.||:.||||||||||.|:|.::|.|||.||:|||
Human    89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 153

  Fly   225 SRILCDNIT-------------------------------------------------------- 233
            ||||.|.:|                                                        
Human   154 SRILVDQVTGQAVREGAPGGGAGQRQSGGTNVGKPTKMPGHEAGKGEVGLHRRGQGRRDGHPCPL 218

  Fly   234 -GLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFANNPSSNKNSMQPLAAYIAPQNTR 297
             |:|:||||||||:|.||:.|||.|||..|..:.||||||||||||  :.:.|.|..::...:.|
Human   219 AGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPS--QKTGQALLTHLYQSSAR 281

  Fly   298 GGRAFPANAAAGAAAAAAAAAIHPNAGRYS---------------SVISRYSPLTSDLITN--GM 345
                            ..|..:|....|:.               |:|:|:||:..|.::.  |:
Human   282 ----------------RYAGPLHHQTQRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGV 330

  Fly   346 IQGNTIASSGWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEA 410
            ......|.:|||||||||:|:.:|:||||||||||||.:||||||..:||||||||||||||:||
Human   331 GLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEA 395

  Fly   411 VLAIQSLNGYTLGNRVLQVSFKTNK 435
            .:||.|||||.||.|||||||||:|
Human   396 AMAIASLNGYRLGERVLQVSFKTSK 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp9NP_001259974.1 ELAV_HUD_SF 107..438 CDD:273741 203/403 (50%)
RRM1_Hu 109..186 CDD:241094 58/76 (76%)
RRM2_Hu 196..274 CDD:241096 53/134 (40%)
RRM3_Hu 355..432 CDD:240823 60/76 (79%)
ELAVL3XP_024307178.1 RRM 36..423 CDD:330708 203/403 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 121 1.000 Domainoid score I5685
eggNOG 1 0.900 - - E1_KOG0145
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 419 1.000 Inparanoid score I1806
Isobase 1 0.950 - 0 Normalized mean entropy S1725
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D425303at33208
OrthoFinder 1 1.000 - - FOG0000313
OrthoInspector 1 1.000 - - mtm8515
orthoMCL 1 0.900 - - OOG6_103306
Panther 1 1.100 - - O PTHR10352
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X326
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1312.780

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