DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp9 and exc-7

DIOPT Version :9

Sequence 1:NP_001259974.1 Gene:Rbp9 / 33498 FlyBaseID:FBgn0010263 Length:684 Species:Drosophila melanogaster
Sequence 2:NP_496057.1 Gene:exc-7 / 174506 WormBaseID:WBGene00001368 Length:456 Species:Caenorhabditis elegans


Alignment Length:454 Identity:197/454 - (43%)
Similarity:261/454 - (57%) Gaps:114/454 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 NNNNNTNNNNNNNATANNNNNNEP-----DPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLI 142
            ||||...:......|:.....:.|     :.|||||:|||||.|:|:|:||||.|.||:|||||:
 Worm    10 NNNNVPTSPVQTTYTSTQRYCSAPNVDIGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLV 74

  Fly   143 RDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGLPKNM 207
            |||||||||||||||||::|||.:|:::.|||||||||||||.||||::.|||:||||||:||:|
 Worm    75 RDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGIPKSM 139

  Fly   208 TQSDLESLFSPYGKIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVK 272
            |..:|||:|.|:|:|||||||.||:|||||||||:|||::.|||.|||.|||:.|...:|.||||
 Worm   140 TLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSGCSEQITVK 204

  Fly   273 FANNPSSNK--------NSMQPLAAYIAPQNTRGGRAFPANAAAGAAAAAAAAAIH--PNAGRYS 327
            |||||:||.        .::|..|..:.|.:|..|      |....|.|.....:|  |...:| 
 Worm   205 FANNPASNNPKGLLSDLEAVQQAATTLVPLSTILG------APTLRATAGGIGPMHHAPITSKY- 262

  Fly   328 SVISRYSPL-----------------------------------------------TSDLI---- 341
                ||||:                                               |:.||    
 Worm   263 ----RYSPMGAITAVSQPTATLPADYLTTSALLQMSQLNALAGLNPFATATAVPDFTASLIAHQQ 323

  Fly   342 ------------------TNGMIQG-------NTIASS-----------GWCIFVYNLAPDTEEN 370
                              |||.:.|       :.:::|           |:|:|||||:.||::.
 Worm   324 QQHAVAQQHAAQTASPPATNGQVAGLAAHAQLSALSASVAATLPPSDTAGYCLFVYNLSSDTDDT 388

  Fly   371 VLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSLNGYTLGNRVLQVSFKTN 434
            :|||||..|||:.:||::||| :.:|||:.||:|:||.||..|:.||||..|..:.|||.||::
 Worm   389 LLWQLFSQFGAIVNVKILRDL-TQQCKGYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQVVFKSS 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp9NP_001259974.1 ELAV_HUD_SF 107..438 CDD:273741 191/425 (45%)
RRM1_Hu 109..186 CDD:241094 59/76 (78%)
RRM2_Hu 196..274 CDD:241096 52/77 (68%)
RRM3_Hu 355..432 CDD:240823 41/76 (54%)
exc-7NP_496057.1 ELAV_HUD_SF 39..455 CDD:273741 191/425 (45%)
RRM1_Hu 41..118 CDD:241094 59/76 (78%)
RRM2_Hu 128..206 CDD:241096 52/77 (68%)
RRM3_Hu 373..449 CDD:240823 41/76 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 119 1.000 Domainoid score I3624
eggNOG 1 0.900 - - E1_KOG0145
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H40729
Inparanoid 1 1.050 253 1.000 Inparanoid score I1971
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D425303at33208
OrthoFinder 1 1.000 - - FOG0000313
OrthoInspector 1 1.000 - - otm14623
orthoMCL 1 0.900 - - OOG6_103306
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X326
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.730

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