DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp9 and Elavl3

DIOPT Version :9

Sequence 1:NP_001259974.1 Gene:Rbp9 / 33498 FlyBaseID:FBgn0010263 Length:684 Species:Drosophila melanogaster
Sequence 2:NP_034617.1 Gene:Elavl3 / 15571 MGIID:109157 Length:367 Species:Mus musculus


Alignment Length:358 Identity:205/358 - (57%)
Similarity:247/358 - (68%) Gaps:35/358 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 NATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYV 159
            |......|....|.|||||||||||.|:|||.:|||.|.|::|||||:|||:||||||||||||.
Mouse    24 NGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88

  Fly   160 KQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIIT 224
            ...||:||||.||||:||.||||||.|||||.||:.||||||||||.|:|.::|.|||.||:|||
Mouse    89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 153

  Fly   225 SRILCDNITGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFANNPSSNKNSMQPLAA 289
            ||||.|..||:|:||||||||:|.||:.|||.|||..|..:.||||||||||||  :.:.|.|..
Mouse   154 SRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPS--QKTGQALLT 216

  Fly   290 YIAPQNTRGGRAFPANAAAGAAAAAAAAAIHPNAGRYS---------------SVISRYSPLTSD 339
            ::...:.|                ..|..:|....|:.               |:|:|:||:..|
Mouse   217 HLYQSSAR----------------RYAGPLHHQTQRFRLDNLLNMAYGVKSPLSLIARFSPIAID 265

  Fly   340 LITN--GMIQGNTIASSGWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFV 402
            .::.  |:......|.:|||||||||:|:.:|:||||||||||||.:||||||..:|||||||||
Mouse   266 GMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 330

  Fly   403 TMTNYEEAVLAIQSLNGYTLGNRVLQVSFKTNK 435
            |||||:||.:||.|||||.||.|||||||||:|
Mouse   331 TMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp9NP_001259974.1 ELAV_HUD_SF 107..438 CDD:273741 203/346 (59%)
RRM1_Hu 109..186 CDD:241094 58/76 (76%)
RRM2_Hu 196..274 CDD:241096 53/77 (69%)
RRM3_Hu 355..432 CDD:240823 60/76 (79%)
Elavl3NP_034617.1 ELAV_HUD_SF 36..366 CDD:273741 203/346 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 121 1.000 Domainoid score I5668
eggNOG 1 0.900 - - E1_KOG0145
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 420 1.000 Inparanoid score I1774
Isobase 1 0.950 - 0 Normalized mean entropy S1725
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D425303at33208
OrthoFinder 1 1.000 - - FOG0000313
OrthoInspector 1 1.000 - - mtm8744
orthoMCL 1 0.900 - - OOG6_103306
Panther 1 1.100 - - O PTHR10352
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X326
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.780

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