DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3104 and Cdkn2c

DIOPT Version :10

Sequence 1:NP_608724.1 Gene:CG3104 / 33486 FlyBaseID:FBgn0031473 Length:321 Species:Drosophila melanogaster
Sequence 2:NP_571977.1 Gene:Cdkn2c / 54238 RGDID:2325 Length:168 Species:Rattus norvegicus


Alignment Length:171 Identity:52/171 - (30%)
Similarity:81/171 - (47%) Gaps:14/171 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 QLHMAAMRGDEVALLRVLDSGKVHVDCKDEDGTTPLILAAAGGHTYCVMELLDQGADPNSRRLTG 76
            :|..||.|||...|..:|.: .|:|:.::..|.|.|.:... |:......||.:||:||.:..||
  Rat     8 ELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPNLKDRTG 70

  Fly    77 TTPLFFAAQGGHLDVVKILIKAGASVDTPSADGGTPLFVACQGGHVKIVRELLD---CGANVNAH 138
            ...:..||:.|.||.|:.|::..|.|:....:|..||.:|.:.||:.:|..|:.   |......|
  Rat    71 FAVIHDAARAGFLDTVQALLEFQADVNIEDNEGNLPLHLAAKEGHLPVVEFLMKHTACNVGHRNH 135

  Fly   139 MKDRATPVFISAQNGHRTVLSLLIQAGAEIDIKRIDGATPL 179
            ..|  |...::...|...|:||:...|       :.|||.|
  Rat   136 KGD--TAFDLARFYGRNEVISLMEANG-------VGGATSL 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3104NP_608724.1 ANKYR 13..277 CDD:440430 52/170 (31%)
ANK repeat 13..40 CDD:293786 10/26 (38%)
ANK repeat 42..73 CDD:293786 10/30 (33%)
ANK repeat 75..106 CDD:293786 11/30 (37%)
ANK repeat 108..137 CDD:293786 9/31 (29%)
ANK repeat 141..171 CDD:293786 7/29 (24%)
ANK repeat 174..204 CDD:293786 4/6 (67%)
ANK repeat 207..237 CDD:293786
ANK repeat 239..270 CDD:293786
Cdkn2cNP_571977.1 ANKYR <9..160 CDD:440430 47/154 (31%)
ANK repeat 37..67 CDD:293786 10/30 (33%)
ANK repeat 69..100 CDD:293786 11/30 (37%)
ANK repeat 102..134 CDD:293786 9/31 (29%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.