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Protein Alignment CG3104 and nompC

DIOPT Version :10

Sequence 1:	NP_608724.1	Gene:	CG3104 / 33486	FlyBaseID:	FBgn0031473	Length:	321	Species:	Drosophila melanogaster
Sequence 2:	NP_523483.2	Gene:	nompC / 33768	FlyBaseID:	FBgn0016920	Length:	1761	Species:	Drosophila melanogaster

Alignment Length:	349	Identity:	101/349 - (28%)
Similarity:	159/349 - (45%)	Gaps:	65/349 - (18%)

- Green bases have known domain annotations that are detailed below.

  Fly     1 MSLKKETPSDVQLHMAAMRGDEVALLRVLDSGKVHVDCKDE------------------------ 41
            ::|:|:||    ||:||..|.......:|:.| .::|..|:
  Fly   756 LTLRKQTP----LHLAAASGQMEVCQLLLELG-ANIDATDDLGQKPIHVAAQNNYSEVAKLFLQQ 815

  Fly    42 ----------DGTTPLILAAAGGHTYCVMELL--DQGADPNSR-RLTGTTPLFFAAQGGHLDVVK 93
                      ||.|...:||..|....:.||:  |:....::| :||..|||..||:|||.||||
  Fly   816 HPSLVNATSKDGNTCAHIAAMQGSVKVIEELMKFDRSGVISARNKLTDATPLQLAAEGGHADVVK 880

  Fly    94 ILIKAGASVDTPSADGGTPLFVACQGGHVKIVRELLDCGA-NVNAHMKDRATPVFISAQNGHR-T 156
            .|::||||....:..|.|.:.:|.|.||.:::..|....: .:|: .|...||:.::|..|.. |
  Fly   881 ALVRAGASCTEENKAGFTAVHLAAQNGHGQVLDVLKSTNSLRINS-KKLGLTPLHVAAYYGQADT 944

  Fly   157 VLSLLIQAGAEI------------DIKRIDGATPLWIAAQMGQDHICKVLLQN-GANVDTVRCD- 207
            |..||....|.:            |:....|.|||.:||..|.:::.::||.: |..||....:
  Fly   945 VRELLTSVPATVKSETPTGQSLFGDLGTESGMTPLHLAAFSGNENVVRLLLNSAGVQVDAATIEN 1009

  Fly   208 GATPLFKAAHKGHAAVITVLLKYRPNL--GQLPNGESALHAAAMFGHMTVCKQLVAAGSDVLLKN 270
            |..||..|...||.:|:.:||.....|  .|..||.:.||.|||.||:.:.:.|:..|:::...:
  Fly  1010 GYNPLHLACFGGHMSVVGLLLSRSAELLQSQDRNGRTGLHIAAMHGHIQMVEILLGQGAEINATD 1074

  Fly   271 HDGLTALQLA----HQQKYTSICD 290
            .:|.|.|..|    |.:....:|:
  Fly  1075 RNGWTPLHCAAKAGHLEVVKLLCE 1098

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.