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Protein Alignment CG3104 and trp-4

DIOPT Version :9

Sequence 1:	NP_001259969.1	Gene:	CG3104 / 33486	FlyBaseID:	FBgn0031473	Length:	321	Species:	Drosophila melanogaster
Sequence 2:	NP_493429.2	Gene:	trp-4 / 190574	WormBaseID:	WBGene00006616	Length:	1924	Species:	Caenorhabditis elegans

Alignment Length:	408	Identity:	110/408 - (26%)
Similarity:	165/408 - (40%)	Gaps:	104/408 - (25%)

- Green bases have known domain annotations that are detailed below.

  Fly     6 ETPS----DVQLHMAAMRGDEVALLRVLD------------------------------SG---- 32
            |.||    :..:||||..|::..||.:::                              ||
Worm   841 EMPSLNANETAMHMAARSGNQAVLLAMVNKIGAGAVQIVQNKQSKNGWSPLLEACARGHSGVANI 905

  Fly    33 --KVH--VDCKDEDGTTPLILAAAGGHTYCVMELLDQGADPNSRRLTGTTPLFFAAQGGHLDVVK 93
              |.|  :|..||.|.|.|.|||..||...|..||...|..||:..||..||..|||.||:.||.
Worm   906 LLKHHARIDVFDEMGRTALHLAAFNGHLSLVHLLLQHKAFVNSKSKTGEAPLHLAAQHGHVKVVN 970

  Fly    94 ILIK-AGASVDTPSADGGTPLFVACQGGHVKIVRELLDCGANVNAHMKDRATP------------ 145
            :|:: .||:::..:.|..|.|..|.:.|.:.:.:.||..|||.||......||
Worm   971 VLVQDHGAALEAITLDNQTALHFAAKFGQLAVSQTLLALGANPNARDDKGQTPLHLAAENDFPDV 1035

  Fly   146 --VFISAQNGHRTVLSLLIQAG---AEI-----------DIKRID------------GATPLWIA 182
              :|:..:|.:|:||:.:...|   |.|           ::..||            .||.|.:|
Worm  1036 VKLFLKMRNNNRSVLTAIDHNGFTCAHIAAMKGSLAVVRELMMIDKPMVIQAKTKTLEATTLHMA 1100

  Fly   183 AQMGQDHICKVLLQNGANVDTVRCDGATPLFKAAHKGHAAVITVLLKYRPNLGQLPNGESALHAA 247
            |..|..:|.|:||:||||.:.....|.|.|...|..|..:::....|..........|.:|||.|
Worm  1101 AAGGHANIVKILLENGANAEDENSHGMTALHLGAKNGFISILEAFDKILWKRCSRKTGLNALHIA 1165

  Fly   248 AMFGHMTVCKQLV-----AAGSDVLLKNHD---------GLTALQLAHQQKYTSICDYLQERIRT 298
            |.:|:.....:::     ...|:..:.||.         |.|.|.||.|..:.|:       :|.
Worm  1166 AFYGNSDFVNEMLKHVQATVRSEPPIYNHHVNKEFSTEYGFTPLHLAAQSGHDSL-------VRM 1223

  Fly   299 MVARSAKAMATSGVSSTV 316
            ::.:..:..|||...:.:
Worm  1224 LLNQGVQVDATSTTMNVI 1241

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.