DRSC/TRiP Functional Genomics Resources

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Protein Alignment daw and gdf1

DIOPT Version :9

Sequence 1:NP_001259967.1 Gene:daw / 33474 FlyBaseID:FBgn0031461 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_001016819.1 Gene:gdf1 / 549573 XenbaseID:XB-GENE-481419 Length:361 Species:Xenopus tropicalis


Alignment Length:333 Identity:72/333 - (21%)
Similarity:135/333 - (40%) Gaps:108/333 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   326 KSNPSMCFTFKIDDADAEGFDVSTAVLWLFKNKQNR-----TDTA------------SVNSTSAQ 373
            |..|.:||        .|.|:|..:|:.:|.: |.|     :|.:            ::::...:
 Frog    65 KKKPDLCF--------VEEFNVPGSVIRVFPD-QGRFVLPYSDNSHLTQCLEKRLFFNISAIEKE 120

  Fly   374 QTIVVSEVE---------------------------VDQQKDSKYLSAAKTIAI--QSV--NVQD 407
            :.:.:.::|                           :.:.|.|:.|..|:|..:  :||  |:.|
 Frog   121 ERVTMGQLELRFTQNTYYGRVFDLRLYRTLQITLKGMGRNKMSRKLLVAQTFRLLHKSVFFNLTD 185

  Fly   408 ---EW--------MKIDIEWPIKH--WISGHELSHLIQITCGGCDVSDMEEIISVDKDYRPFIVI 459
               .|        :.::| :|||.  |:|                 :..:|.    ||::.|:..
 Frog   186 VCQSWRDPLKNLGLVLEI-FPIKEGSWLS-----------------TPKDEC----KDFQTFLYT 228

  Fly   460 DM-----------QNRRRKSRQKRSINCSSGMTECCREHLYISFRDIGWSNWILKPEGYNAYFCR 513
            .:           :.||::|..|.....|:   .|.:..||:.|:|:||.||::.|.||.|.:|.
 Frog   229 SLMMVTLNPMQCKRPRRKRSYSKLPFTASN---ICKKRRLYVEFKDVGWQNWVIAPRGYMANYCY 290

  Fly   514 GSCSSVASVTQAASHHSSIMKILSTSGANKSLELVPCCTAKQYSSLQLVVMDSSNTATVKTLPNM 578
            |.|....:.....|:| :|::.|..|.....:.| |||...:.|.:.::..|:::...::...||
 Frog   291 GECPYPLTEILNGSNH-AILQTLVHSIEPDDIPL-PCCVPTKMSPISMLFYDNNDNVVLRHYENM 353

  Fly   579 VVESCGCR 586
            .|:.||||
 Frog   354 AVDECGCR 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dawNP_001259967.1 TGFb_propeptide 244..458 CDD:279078 33/192 (17%)
TGF_beta 481..585 CDD:278448 31/103 (30%)
gdf1NP_001016819.1 TGFb_propeptide <108..205 CDD:366248 12/97 (12%)
TGF_beta_GDF1_3_like 260..361 CDD:381642 32/102 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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