DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment daw and Gdf9

DIOPT Version :9

Sequence 1:NP_001259967.1 Gene:daw / 33474 FlyBaseID:FBgn0031461 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_032136.2 Gene:Gdf9 / 14566 MGIID:95692 Length:441 Species:Mus musculus


Alignment Length:482 Identity:100/482 - (20%)
Similarity:170/482 - (35%) Gaps:117/482 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 SSLSSDDHFDDLSPLDFVRNELMAEDQQNQEKDLD---LDLDLDQQPETPIEPEL--PLGERNIT 220
            |||||....:          |..:...:|.|.:.|   |.|.:|....:.:.|.|  .|.:|.  
Mouse    21 SSLSSQASTE----------ESQSGASENVESEADPWSLLLPVDGTDRSGLLPPLFKVLSDRR-- 73

  Fly   221 ISVKSSAGGCPKCE-SNRQVEHITEEQLTHLRIEFV----KQQILEKLRL------KESPKVSAV 274
                   |..||.: .:|.:.::.:...|:...|.|    :..:...:||      :|....:.|
Mouse    74 -------GETPKLQPDSRALYYMKKLYKTYATKEGVPKPSRSHLYNTVRLFSPCAQQEQAPSNQV 131

  Fly   275 ELPKPIFDGMTLSHPDDSTKNKELDDYYARTSKKFILL--------NREEVEC-------NRARD 324
            ..|.|:.|  .|.:.|..|..:.|        .|.:||        :...|.|       .....
Mouse   132 TGPLPMVD--LLFNLDRVTAMEHL--------LKSVLLYTLNNSASSSSTVTCMCDLVVKEAMSS 186

  Fly   325 GKSNPSMCFTFKIDDADAEGFDVSTAVLWLFKNKQNRTDTASVNSTSAQQTIVVSEVEVDQQKDS 389
            |::.|...::|.:........|| |::|........|:...|||.|..:..:....|      .|
Mouse   187 GRAPPRAPYSFTLKKHRWIEIDV-TSLLQPLVTSSERSIHLSVNFTCTKDQVPEDGV------FS 244

  Fly   390 KYLSAAKTIAI----QSVNVQDEWMKIDIEW-PIKHWISGHELSHLIQITCGGCDVSD---MEEI 446
            ..||...::.:    .|......|..:...| |::|              .|...|:.   .||.
Mouse   245 MPLSVPPSLILYLNDTSTQAYHSWQSLQSTWRPLQH--------------PGQAGVAARPVKEEA 295

  Fly   447 ISVDKDYRPFIVIDMQNRRRKSRQKRS------INCSSGMTECCREHLY-----------ISFRD 494
            |.|::..|         |||..:..||      :..|..::|..::.|:           :||..
Mouse   296 IEVERSPR---------RRRGQKAIRSEAKGPLLTASFNLSEYFKQFLFPQNECELHDFRLSFSQ 351

  Fly   495 IGWSNWILKPEGYNAYFCRGSCSSVASVTQAASHHSSIMKILSTSGANKSLELVPCCTAKQYSSL 559
            :.|.|||:.|..||..:|:|.|.........:..|:.:..|:... .:.|:.. |.|...:||.|
Mouse   352 LKWDNWIVAPHRYNPRYCKGDCPRAVRHRYGSPVHTMVQNIIYEK-LDPSVPR-PSCVPGKYSPL 414

  Fly   560 QLVVMDSSNTATVKTLPNMVVESCGCR 586
            .::.::...:...|...:|:...|.||
Mouse   415 SVLTIEPDGSIAYKEYEDMIATRCTCR 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dawNP_001259967.1 TGFb_propeptide 244..458 CDD:279078 47/246 (19%)
TGF_beta 481..585 CDD:278448 25/114 (22%)
Gdf9NP_032136.2 TGF_beta_GDF9 336..441 CDD:381673 23/106 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.