DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment daw and bmp3

DIOPT Version :9

Sequence 1:NP_001259967.1 Gene:daw / 33474 FlyBaseID:FBgn0031461 Length:586 Species:Drosophila melanogaster
Sequence 2:XP_002934044.1 Gene:bmp3 / 100497890 XenbaseID:XB-GENE-483484 Length:458 Species:Xenopus tropicalis


Alignment Length:573 Identity:117/573 - (20%)
Similarity:204/573 - (35%) Gaps:173/573 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 GDILRPHPKHQPHPHVQHTSQQLQQQHHIR--------QQRSRQ-LKHLEPDPTSEEDDVPITKR 90
            ||..|       |.......:....:|.:|        ..|:|: |:|.:|.|...      |.|
 Frog    38 GDAAR-------HEEAAFPLRDTVSEHMLRLYDKYRSGGARARESLRHRQPLPDGN------TVR 89

  Fly    91 EYYARLRRHVIHKRQHLLQQELSYNHPGSHSEQLKVPRLWQHLMEQEEKAHRHVSPPVELPIMYG 155
            .:  |......||:.|.:....|.    :.||.:....|..:|.:....:||  .|..:....:|
 Frog    90 SF--RAMDGDEHKKCHHMFNLTSL----TSSENILSATLHYYLGDLLNSSHR--CPHSQFCTQHG 146

  Fly   156 DAPEESSL-SSDDHFDDL-SPLDFVRNELMAEDQQNQEKDLDLDLDLDQQPETPIEPELPLGE-R 217
            .|..|.:| .:...|..| :|...:.:.|:.....::                    :|||.: :
 Frog   147 HAKTEFTLFLTVWSFTALQNPAHIIGHFLINVSASHR--------------------DLPLWQWK 191

  Fly   218 NITISVKSSAGGCPKCESNRQVEHITEEQL-THLRIEFVKQQILEKLRLKESPKV------SAVE 275
            :||.:|             |:.:...|..| .:|.||....:.:|.|.||  |.:      ||:.
 Frog   192 DITQAV-------------RKAKEYGEAVLGFNLTIELPNHRSVEVLGLK--PYILVYANDSAIS 241

  Fly   276 LPKPIFDGMTLSHPDDSTK-NKELDDYYARTSKKF-ILLNREEVECNRARDGKSNPSMCFTFKID 338
            .|..:...:...|...:.| |::::....|..:.. |||..:..|.         |...:.:.:|
 Frog   242 EPDSVVSSLHGPHTPLTLKPNRKIEKAEQRKKRSTDILLPLQNNEL---------PGAEYQYSVD 297

  Fly   339 DADAEGFDVSTAVLWLFKNKQNRTDTASVNSTSAQQTIVVSEVEVDQQKDSKYLSAAKTIAIQSV 403
            :   ||:: .......|:.:||..|                       |:.|.|..:.....|::
 Frog   298 E---EGWE-ERKPYKTFQGRQNEKD-----------------------KNKKKLRKSNRQKSQTL 335

  Fly   404 NVQDEWMKIDIEWPIKHWISGHELSHLIQITCGGCDVSDMEEIISVDKDYRPFIVIDMQNRRRKS 468
            ...::.:|                                                  :.||::.
 Frog   336 QFDEQTLK--------------------------------------------------KARRKQW 350

  Fly   469 RQKRSINCSSGMTECCREHLYISFRDIGWSNWILKPEGYNAYFCRGSCSSVASVTQAASHHSSIM 533
            .:.|:         |.|.:|.:.|.|||||.||:.|:.::||:|.|:|......:...|:|::|.
 Frog   351 NEPRN---------CARRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQ 406

  Fly   534 KILSTSGANKSLELVPCCTAKQYSSLQLVVMDSSNTATVKTLPNMVVESCGCR 586
            .|:...|....:. .|||..::.|||.::.:|.:....:|..|||.||||.||
 Frog   407 SIVRAVGVVPGIP-EPCCVPEKMSSLSILFLDENKNVVLKVYPNMTVESCACR 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dawNP_001259967.1 TGFb_propeptide 244..458 CDD:279078 34/222 (15%)
TGF_beta 481..585 CDD:278448 37/103 (36%)
bmp3XP_002934044.1 TGFb_propeptide <58..234 CDD:366248 46/224 (21%)
TGF_beta_BMP3 349..458 CDD:381663 38/118 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11848
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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