DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syt1 and Sytl2

DIOPT Version :9

Sequence 1:NP_523460.2 Gene:Syt1 / 33473 FlyBaseID:FBgn0004242 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_001355807.1 Gene:Sytl2 / 83671 MGIID:1933366 Length:2153 Species:Mus musculus


Alignment Length:590 Identity:138/590 - (23%)
Similarity:220/590 - (37%) Gaps:193/590 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 ETDAKPEAEPAPASEPAADLESVDQK-----LEETHHS--KFREV--------DRQEQEVLAEKA 57
            ||.|..|    |..|.|....||.:.     |.||...  |.|||        .|||:|...|..
Mouse  1608 ETQASQE----PGFEEAPKEMSVSRNKHSIVLLETKGKAIKTREVKLVLATPYKRQEEEQGPEAC 1668

  Fly    58 AE-------AASQRIAQVESTTRSATTEAQESTTTAVPVIKKIEHVGEVVTEVIAERTGLPTWGV 115
            :|       .:|.|    |:...::::|.:.|     ||:|.:|                     
Mouse  1669 SEYEFSDGNTSSNR----ENWRNTSSSEEEHS-----PVLKTLE--------------------- 1703

  Fly   116 VAIIILVFLVVFGIIFFCVRRFLKKRRTK-------DGKGKKGVDMKSVQLLGSA---YKEKVQP 170
                               ||..:|..:|       |...:..||....:|:.||   .|...:|
Mouse  1704 -------------------RRAARKLPSKSLEDIPSDSSNQAKVDNLPEELVRSAEDDQKADQEP 1749

  Fly   171 DMEE----------LTEN-------------------AEEGDEED--------------KQSEQK 192
            |..|          |.:|                   .:|.|:.:              |:|...
Mouse  1750 DTNECIPGISTVPSLPDNQFSHPDKLKRMSKSVPAFLQDESDDRETDTASESSYQLRRYKKSPSS 1814

  Fly   193 L---------------------------------GRLNFKLEYDFNSNSLAVTVIQAEELPALDM 224
            |                                 |.:.|.|:|..:...|.|.|.|.::|.|.|:
Mouse  1815 LTNLSSSSGMTSLSSASGSVMSVYSGDFGNLEVKGSVQFALDYVESLKELHVFVAQCKDLAAADV 1879

  Fly   225 -GGTSDPYVKVYLLPDKKK--KFETKVHRKTLSPVFNETFTFKSLPYADAMNKTLVFAIFDFDRF 286
             ...||||||.||||||.|  |.:|.|.:|||:||:||...:| :.......:.|..:::..|.|
Mouse  1880 KKQRSDPYVKTYLLPDKGKMGKKKTLVVKKTLNPVYNEILRYK-IERQFLKTQKLNLSVWHRDTF 1943

  Fly   287 SKHDQIGEVKVPLCTIDLAQTIE---EWRDL------VSVEGEGGQEKLGDICFSLRYV------ 336
            .::..:|||::.|.|.|......   :|..|      |::|    .|..|::..:|:||      
Mouse  1944 KRNSFLGEVELDLETWDWDSKQNKQLKWYPLKRKTAPVALE----TENRGEMKLALQYVPEPSPG 2004

  Fly   337 ---PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIAIMQNGKRLKKKKTSIKKCTLNPYYNESFSF 398
               ||.|::.:.:.|..:|..:. |...:.:||..|:.:..|..::||.....|.||.:|.:..:
Mouse  2005 KKLPTTGEVHIWVKECLDLPLLR-GSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPVFNHTMVY 2068

  Fly   399 EVPF--EQIQKICLVVTVVDYDRIGTSEPIGRCILGCMGTGTELRHWSDMLASPRRPIAQWHTLK 461
            : .|  |.:.:.|:.:||.|:.:: |::.:|...:| .|||.......|.:.|....:|.|..:.
Mouse  2069 D-GFRPEDLMEACVELTVWDHYKL-TNQFLGGLRIG-FGTGKSYGTEVDWMDSTSEEVALWEKMV 2130

  Fly   462 DPEET 466
            :...|
Mouse  2131 NSPNT 2135

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt1NP_523460.2 Podoplanin 5..136 CDD:283467 31/149 (21%)
C2A_Synaptotagmin-1-5-6-9-10 192..316 CDD:176031 47/168 (28%)
C2B_Synaptotagmin-1 326..461 CDD:176047 36/145 (25%)
Sytl2NP_001355807.1 PHD_SF 5..>41 CDD:419867
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 78..98
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 116..289
C2A_SLP-1_2 1848..1975 CDD:176039 45/127 (35%)
C2B_SLP_1-2-3-4 1988..2144 CDD:175987 37/152 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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