DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syt1 and SYTC

DIOPT Version :10

Sequence 1:NP_523460.2 Gene:Syt1 / 33473 FlyBaseID:FBgn0004242 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_974729.1 Gene:SYTC / 830301 AraportID:AT5G04220 Length:540 Species:Arabidopsis thaliana


Alignment Length:411 Identity:99/411 - (24%)
Similarity:162/411 - (39%) Gaps:102/411 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 HHSKFREVDRQEQEVLAEKAAEAASQRIAQVESTTRSATTEAQESTTTAVPVIKKIEHVGEVVTE 102
            |..||.|.:  |:|:|.|.:.:.|                    .....|.|:|.:.      ..
plant   128 HGVKFYETN--EKELLFEPSIKWA--------------------GNPNIVLVLKVLS------LR 164

  Fly   103 VIAERTGLPTWGVVAIIILVFLVVFGIIFFCVRRFLKKRRTKDGKGKKGVDMKSVQLLGSAYKEK 167
            :..:...|..:.:|.:.:...|..|......|...::|.....|....|.|:.|:..|....:|.
plant   165 IRVQLVDLQFFAIVRVALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSIPGLYRYVQET 229

  Fly   168 VQ---------PDMEELTENAEEGDEEDKQSEQKLGRLNFKLEYDFNSNSLAVTVIQAEELPALD 223
            ::         |.:.|:...    |......::.:|.|:             |::::|..|...|
plant   230 IKRQVSSMYHWPQVLEIPIL----DSSTASVKKPVGLLH-------------VSILRARNLLKKD 277

  Fly   224 MGGTSDPYVKVYLLPDKKKKFETKVHRKTLSPVFNETFTFKSLPYADAMNKTLVFAIFDFDRFSK 288
            :.||||||||:.|..:|....:|.:.::.|:|.:||.|   .|...|..::.|...:||:|:...
plant   278 LLGTSDPYVKLSLTGEKLPAKKTTIKKRNLNPEWNEHF---KLIVKDPNSQVLQLEVFDWDKVGG 339

  Fly   289 HDQIGEVKVPLCTIDLAQTIEEWRDLVS----VEGEGGQEKLGDICFSLRYVP------------ 337
            ||::|...:||..|:..:..|...||:.    |...|.::|.|.:...|||||            
plant   340 HDRLGMQMIPLQKINPGERKEFNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPFREESIKRRKES 404

  Fly   338 -------------TAGKLTVVILEAKNLKKMDVGGL---SDPYVKIAIMQNGKRLKKKKTSIKKC 386
                         .||.|:|.:..||     ||.|.   |:||..:..     |.:||||.:.|.
plant   405 REEKSSEDDDFLSQAGLLSVAVQSAK-----DVEGKKKHSNPYAVVLF-----RGEKKKTKMLKK 459

  Fly   387 TLNPYYNESFSF---EVPFEQ 404
            |.:|.:||.|.|   |.|.::
plant   460 TRDPRWNEEFQFTLEEPPVKE 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt1NP_523460.2 Syt1_2_N 62..161 CDD:425364 13/98 (13%)
C2A_Synaptotagmin-1-5-6-9-10 192..316 CDD:176031 37/123 (30%)
C2B_Synaptotagmin-1 326..461 CDD:176047 32/110 (29%)
SYTCNP_974729.1 DUF456 <7..>30 CDD:461257
SMP_SYT 62..248 CDD:439233 26/147 (18%)
COG5038 67..>538 CDD:227371 99/411 (24%)
Blue background indicates that the domain is not in the aligned region.

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