DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syt1 and Syt13

DIOPT Version :9

Sequence 1:NP_523460.2 Gene:Syt1 / 33473 FlyBaseID:FBgn0004242 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_109650.1 Gene:Syt13 / 80976 MGIID:1933945 Length:426 Species:Mus musculus


Alignment Length:464 Identity:114/464 - (24%)
Similarity:185/464 - (39%) Gaps:95/464 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 DAKPEAEPA-PASEPAADLESVDQKLEETHHS---KFREVDRQEQEVLAEKAAEAASQRIAQVES 70
            |.:|:.|.| |....||...::.:..|.....   ||.::......|.|.:....|...:...|.
Mouse    43 DREPDPEKARPGVLQAAQQFNIKKSTEPVQPRPLLKFPDIYGPRPAVTAPEVINYADYTLETTEE 107

  Fly    71 TTRSATTEAQESTTTAVPVIKKIEHVGEVVTEVIAERTGLPTWGVVAIIILVFLVVFGIIFFCVR 135
            :...|:.:||..:           .:...|||.::.|   |..|||..:             || 
Mouse   108 SAAPASPQAQSDS-----------RLKRQVTEELSIR---PQNGVVEDV-------------CV- 144

  Fly   136 RFLKKRRTKDGKGKKGVDMKSVQLLGSAYKEKVQPDMEELTENAEEGDEEDKQSEQKLGRLNFKL 200
                                                       .|..:.|...|..:..:|:|:|
Mouse   145 -------------------------------------------METWNPEKAASWNQAPKLHFRL 166

  Fly   201 EYDFNSNSLAVTVIQAEELPALDMGGTSDPYVK-VYLLPDKKKKFETKVHRKTLSPVFNETFTF- 263
            :||.....|.||.::|   ...|..|..|.|:: ...:.....:.:|.:.::.|...:.|.... 
Mouse   167 DYDQKKAELFVTSLEA---VTSDHEGGCDCYIQGSVAVKTGSVEAQTALKKRQLHTTWEEGLALP 228

  Fly   264 ---KSLPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCTIDLAQTIEEWRDL--VSVEGEGGQ 323
               :.||.|     ||...:...||||:|..|||:::.|....:.....:|.:|  .:.|...| 
Mouse   229 LGEEELPTA-----TLTLTLRTCDRFSRHSVIGELRLGLDGASVPLGAAQWGELKTTAKEPSAG- 287

  Fly   324 EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGL--SDPYVKIAIMQNGKRLKKKKTSIKKC 386
              .|::..|:.|:|.|.:|.||:::||||.......|  .|..||:.:....::||||:|...|.
Mouse   288 --AGEVLLSISYLPAANRLLVVLIKAKNLHSNQSKELLGKDVSVKVTLKHQAQKLKKKQTKRAKH 350

  Fly   387 TLNPYYNESFSFEVPFEQIQKICLVVTVVDYDRIGTSEPIGRCILGCMGTGTELRHWSDMLASPR 451
            .:||.:||...||:|.:.::...:.:.|:.....|.|..:|.|.||...:|:|..||.:||.:||
Mouse   351 KINPVWNEMIMFELPDDLLRASSVELEVLGQGEEGPSCELGHCSLGLHASGSERSHWEEMLKNPR 415

  Fly   452 RPIAQWHTL 460
            |.||.||.|
Mouse   416 RQIAMWHQL 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt1NP_523460.2 Podoplanin 5..136 CDD:283467 27/129 (21%)
C2A_Synaptotagmin-1-5-6-9-10 192..316 CDD:176031 32/130 (25%)
C2B_Synaptotagmin-1 326..461 CDD:176047 50/137 (36%)
Syt13NP_109650.1 C2 160..277 CDD:301316 31/124 (25%)
C2B_Synaptotagmin-13 288..425 CDD:176052 50/137 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D925064at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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