DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syt1 and Pla2g4d

DIOPT Version :9

Sequence 1:NP_523460.2 Gene:Syt1 / 33473 FlyBaseID:FBgn0004242 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_001019308.1 Gene:Pla2g4d / 78390 MGIID:1925640 Length:825 Species:Mus musculus


Alignment Length:149 Identity:43/149 - (28%)
Similarity:71/149 - (47%) Gaps:6/149 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   209 LAVTVIQAEELPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLSPVFNETFTFKSLPYADAMN 273
            |.|.:::|..||..|:...:||||.|.|......||:|:....:..||:||||:|  |..:...|
Mouse    33 LTVKILEARSLPRADLLSQADPYVTVQLPTASGMKFKTQTVTNSSHPVWNETFSF--LIQSQVKN 95

  Fly   274 KTLVFAIFDFDRFSKHDQIGEVKVPLCTIDLAQTIEEWRDLVSVEGEGGQEKLGDICFSLRYVPT 338
             .|...|:|.|..:|.|...:|...:..|...|.:::   ..|:..:|.:|...::.....:.|.
Mouse    96 -ILELTIYDEDVITKDDICFKVSYDVSEILPGQLLQK---TFSLNPQGPEELDVELLMER
TWDPP 156

  Fly   339 AGKLTVVILEAKNLKKMDV 357
            ...:|..:|.|:.|..:||
Mouse   157 ENLITNNVLVARELSHLDV 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt1NP_523460.2 Podoplanin 5..136 CDD:283467
C2A_Synaptotagmin-1-5-6-9-10 192..316 CDD:176031 33/106 (31%)
C2B_Synaptotagmin-1 326..461 CDD:176047 7/32 (22%)
Pla2g4dNP_001019308.1 C2_cPLA2 32..151 CDD:176001 36/123 (29%)
Patatin_and_cPLA2 278..814 CDD:299702
PLAc 283..758 CDD:214474
Substrate binding. /evidence=ECO:0000250|UniProtKB:Q86XP0 339..340
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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