DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syt1 and syt3

DIOPT Version :9

Sequence 1:NP_523460.2 Gene:Syt1 / 33473 FlyBaseID:FBgn0004242 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_001186849.1 Gene:syt3 / 779540 XenbaseID:XB-GENE-956378 Length:544 Species:Xenopus tropicalis


Alignment Length:449 Identity:165/449 - (36%)
Similarity:250/449 - (55%) Gaps:45/449 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 HHSKFREV--DRQE-QEVLAEKA---AEAASQRIAQVESTTRSATTEAQESTTTAVPVIKKIEHV 96
            |||.:.::  ||.| ...:.|::   .::..:...::..|:.....::|....:.:|..:..:.|
 Frog   105 HHSHYGDLLADRVELGPEMPERSYLDMDSYPETNIKISQTSPDIPVDSQPPKESQIPYAQSHQQV 169

  Fly    97 GEVVTEVIAERTGLPT-------WGVVAIIILVFLVVFGIIFFCVRRFLKKRRTKDGKGKKGVDM 154
            ..:....:|.....|.       :..:.                 |...::..:.|..|.  ||.
 Frog   170 ANIAPANVAPANVAPANVAPANRYSTLP-----------------RPMTQQLSSPDFSGH--VDE 215

  Fly   155 KSVQLLGSAYKEKVQPDMEELTENAEEGDEEDKQSEQKLGRLNFKLEYDFNSNSLAVTVIQAEEL 219
            |..|.....   :::|   ||.:......|..||.....||::|.|.|.:||..|.|.:::|.||
 Frog   216 KPEQATSIG---QIKP---ELYKQRSADAEMKKQEATSCGRISFILRYAYNSEQLVVKILKALEL 274

  Fly   220 PALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLSPVFNETFTFKSLPYADAMNKTLVFAIFDFD 284
            ||.|..|.||||||:|||||:||||:||||||||:|:|||||.| ::|:.:..|:.|.|:|:|||
 Frog   275 PAKDANGFSDPYVKMYLLPDRKKKFQTKVHRKTLNPIFNETFHF-NVPFNELQNRKLHFSIYDFD 338

  Fly   285 RFSKHDQIGEVKVPLCTIDLAQTIEE---WRDLVSVEGEGGQEKLGDICFSLRYVPTAGKLTVVI 346
            |||:||.||:|.:. ..::.:...:|   |||::....|  :..||:|.|||.|:||||:||..|
 Frog   339 RFSRHDLIGQVVLD-NLLEFSNATDETPIWRDILEASSE--KADLGEINFSLCYLPTAGRLTATI 400

  Fly   347 LEAKNLKKMDVGGLSDPYVKIAIMQNGKRLKKKKTSIKKCTLNPYYNESFSFEVPFEQIQKICLV 411
            ::|.|||.||:.|.||||||.:::..|:||||:||||||.||||.|||:..|::|.|.:..:.|.
 Frog   401 IKATNLKAMDLTGFSDPYVKASLICEGRRLKKRKTSIKKNTLNPTYNEALVFDIPNENMDHVSLT 465

  Fly   412 VTVVDYDRIGTSEPIGRCILGCMGTGTELRHWSDMLASPRRPIAQWHTLKDPEETDEIL 470
            :.|:|||.||.:|.||.|.:|.........||::|||:||:||..||.|.:.:..:..:
 Frog   466 IAVMDYDCIGHNEVIGMCRVGSDADMQGREHWNEMLANPRKPIEHWHQLVEEKALNSFM 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt1NP_523460.2 Podoplanin 5..136 CDD:283467 13/110 (12%)
C2A_Synaptotagmin-1-5-6-9-10 192..316 CDD:176031 66/126 (52%)
C2B_Synaptotagmin-1 326..461 CDD:176047 71/134 (53%)
syt3NP_001186849.1 C2A_Synaptotagmin-1-5-6-9-10 248..372 CDD:176031 66/125 (53%)
C2B_Synaptotagmin-3-5-6-9-10 381..514 CDD:176048 70/132 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D394604at33208
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.920

Return to query results.
Submit another query.