DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syt1 and syt3

DIOPT Version :10

Sequence 1:NP_523460.2 Gene:Syt1 / 33473 FlyBaseID:FBgn0004242 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_001186849.1 Gene:syt3 / 779540 XenbaseID:XB-GENE-956378 Length:544 Species:Xenopus tropicalis


Alignment Length:449 Identity:165/449 - (36%)
Similarity:250/449 - (55%) Gaps:45/449 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 HHSKFREV--DRQE-QEVLAEKA---AEAASQRIAQVESTTRSATTEAQESTTTAVPVIKKIEHV 96
            |||.:.::  ||.| ...:.|::   .::..:...::..|:.....::|....:.:|..:..:.|
 Frog   105 HHSHYGDLLADRVELGPEMPERSYLDMDSYPETNIKISQTSPDIPVDSQPPKESQIPYAQSHQQV 169

  Fly    97 GEVVTEVIAERTGLPT-------WGVVAIIILVFLVVFGIIFFCVRRFLKKRRTKDGKGKKGVDM 154
            ..:....:|.....|.       :..:.                 |...::..:.|..|.  ||.
 Frog   170 ANIAPANVAPANVAPANVAPANRYSTLP-----------------RPMTQQLSSPDFSGH--VDE 215

  Fly   155 KSVQLLGSAYKEKVQPDMEELTENAEEGDEEDKQSEQKLGRLNFKLEYDFNSNSLAVTVIQAEEL 219
            |..|.....   :::|   ||.:......|..||.....||::|.|.|.:||..|.|.:::|.||
 Frog   216 KPEQATSIG---QIKP---ELYKQRSADAEMKKQEATSCGRISFILRYAYNSEQLVVKILKALEL 274

  Fly   220 PALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLSPVFNETFTFKSLPYADAMNKTLVFAIFDFD 284
            ||.|..|.||||||:|||||:||||:||||||||:|:|||||.| ::|:.:..|:.|.|:|:|||
 Frog   275 PAKDANGFSDPYVKMYLLPDRKKKFQTKVHRKTLNPIFNETFHF-NVPFNELQNRKLHFSIYDFD 338

  Fly   285 RFSKHDQIGEVKVPLCTIDLAQTIEE---WRDLVSVEGEGGQEKLGDICFSLRYVPTAGKLTVVI 346
            |||:||.||:|.:. ..::.:...:|   |||::....|  :..||:|.|||.|:||||:||..|
 Frog   339 RFSRHDLIGQVVLD-NLLEFSNATDETPIWRDILEASSE--KADLGEINFSLCYLPTAGRLTATI 400

  Fly   347 LEAKNLKKMDVGGLSDPYVKIAIMQNGKRLKKKKTSIKKCTLNPYYNESFSFEVPFEQIQKICLV 411
            ::|.|||.||:.|.||||||.:::..|:||||:||||||.||||.|||:..|::|.|.:..:.|.
 Frog   401 IKATNLKAMDLTGFSDPYVKASLICEGRRLKKRKTSIKKNTLNPTYNEALVFDIPNENMDHVSLT 465

  Fly   412 VTVVDYDRIGTSEPIGRCILGCMGTGTELRHWSDMLASPRRPIAQWHTLKDPEETDEIL 470
            :.|:|||.||.:|.||.|.:|.........||::|||:||:||..||.|.:.:..:..:
 Frog   466 IAVMDYDCIGHNEVIGMCRVGSDADMQGREHWNEMLANPRKPIEHWHQLVEEKALNSFM 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt1NP_523460.2 Syt1_2_N 62..161 CDD:425364 13/105 (12%)
C2A_Synaptotagmin-1-5-6-9-10 192..316 CDD:176031 66/126 (52%)
C2B_Synaptotagmin-1 326..461 CDD:176047 71/134 (53%)
syt3NP_001186849.1 C2A_Synaptotagmin-1-5-6-9-10 248..372 CDD:176031 66/125 (53%)
C2B_Synaptotagmin-3-5-6-9-10 381..514 CDD:176048 70/132 (53%)

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