DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Syt1 and Syt14

DIOPT Version :9

Sequence 1:NP_523460.2 Gene:Syt1 / 33473 FlyBaseID:FBgn0004242 Length:474 Species:Drosophila melanogaster
Sequence 2:XP_008768117.1 Gene:Syt14 / 684293 RGDID:1592654 Length:859 Species:Rattus norvegicus


Alignment Length:521 Identity:112/521 - (21%)
Similarity:198/521 - (38%) Gaps:115/521 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 EPAADLESVD-------QKLEETHHSKFREVDRQEQEVLAEKAAEAASQRIAQVESTTRSATTEA 79
            ||.:..||.|       :.|..||:|::..||.:::....|     ..|:.:.:.:.....:|||
  Rat   369 EPGSSSESEDEALGKYHEALSRTHNSRWPLVDSRQKSYTWE-----TRQKYSPLSAEYDGYSTEA 428

  Fly    80 QESTTTAVPVIKKIEHVGEVVTEVIAERTGLPTWGVVAIIILVFLVVFGIIFFCVRRFLKKRRTK 144
            .......:..:::...:.|:......:.:|.|.                  ..|....:...:.:
  Rat   429 SIEDGNCIQRMRRTPPLDELQPPPYQDDSGSPH------------------LSCTPSEIGDAKCE 475

  Fly   145 ---------------DGKGKKGVDMKSVQLLGSAYKEKVQPDMEEL---TENAEEGDEE------ 185
                           ..:|..|.:.:|....|  |::.|..|...:   .:.:.:|...      
  Rat   476 ISHCSNSPRCSFNKCPSEGSTGHEAESYHNKG--YEDDVPSDSTAVLSPEDMSAQGSASQLPKPF 538

  Fly   186 DKQSEQKLGRLNFKLEYDFNSNSLAVTVIQAEELPALDMGGTSDPYVKVYLLPDKKKKFETKVHR 250
            |.:.|.|.|.|:...:||.....|.|||....::|..:..|.:...|.:.|||.||::.:|.:.|
  Rat   539 DPEPEAKYGTLDVTFDYDSERQKLLVTVTAVTDIPTYNRTGGNSWQVHLVLLPIKKQRAKTSIQR 603

  Fly   251 KTLSPVFNETFTFKSLPYADAMNKTLVFAIFDFDRFSKHDQIGE--------------------- 294
            .. .|||.|||.|..:......|..:.|.::...|..|...:||                     
  Rat   604 GP-CPVFTETFKFNHVESEMIGNYAVRFRLYGVHRMKKEKIVGEKIFYLTKLNLQGKMSLPVILE 667

  Fly   295 ---------VKVPLCTIDLAQTIEEWRDLVSVEGEGGQEKLGDICFSLRYVPTAGKLTVVILEAK 350
                     .:|.|..:....:....:.|     |.|  .:.:|...|.|..|.|:|:..:::..
  Rat   668 PSYNPSGCDSQVSLSEVSCGDSTSSCQSL-----EHG--SVPEILIGLLYNATTGRLSAEVIKGS 725

  Fly   351 NLKKMD---------------VGG----LSDPYVKIAIMQN-GKRLKKKKTSIKKCTLNPYYNES 395
            :.|.:.               :||    :.|.|||:.::.: |:.:.|.|||.::...||.|.|:
  Rat   726 HFKNLAANRPPNGLFCCLKHLIGGQVYIIRDTYVKLTLLNSMGQEMSKCKTSTRRGQPNPVYKET 790

  Fly   396 FSFEVPFEQIQKICLVVTVVDYDRIGTSEPIGRCILGCMGTG-TELRHWSDMLASPRRPIAQWHT 459
            |.|:|...|:..:.|:::|.:...:...|.||...||...:| .||||||.|..|..:.:.:||.
  Rat   791 FVFQVALFQLSDVTLILSVYNKRSMKRKEMIGWISLGLNSSGEEELRHWSAMKESKGQQVCRWHA 855

  Fly   460 L 460
            |
  Rat   856 L 856

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syt1NP_523460.2 Podoplanin 5..136 CDD:283467 20/120 (17%)
C2A_Synaptotagmin-1-5-6-9-10 192..316 CDD:176031 35/153 (23%)
C2B_Synaptotagmin-1 326..461 CDD:176047 45/156 (29%)
Syt14XP_008768117.1 C2A_Synaptotagmin-14_16 545..668 CDD:176035 32/123 (26%)
C2B_Synaptotagmin-14_16 701..857 CDD:176053 45/156 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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