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Protein Alignment Syt1 and Syt11

DIOPT Version :9

Sequence 1:	NP_523460.2	Gene:	Syt1 / 33473	FlyBaseID:	FBgn0004242	Length:	474	Species:	Drosophila melanogaster
Sequence 2:	XP_006232810.1	Gene:	Syt11 / 60568	RGDID:	62042	Length:	430	Species:	Rattus norvegicus

Alignment Length:	365	Identity:	139/365 - (38%)
Similarity:	210/365 - (57%)	Gaps:	45/365 - (12%)

- Green bases have known domain annotations that are detailed below.

  Fly   135 RRFLKKRRTKD------GKGKKGVDMKSVQL-------------------LGSAYKEKVQPDMEE 174
            ::.:|.||.||      |:|...|:.:|..|                   :...|.|:::..|..
  Rat    73 KKIIKVRRDKDGSHRESGRGNLLVNAESGLLSHDRDPRGPSPASCIDQLPIKRDYGEELRSPMTS 137

  Fly   175 LT-----ENAEEGDEEDKQSEQKLGRLNFKLEYDFNSNSLAVTVIQAEELPALDMGGT--SDPYV 232
            ||     ..:....|||..    ||.|.|.::|:|...:|.||:.:|..||.:| |.|  ||||:
  Rat   138 LTPGESKPTSPSSPEEDVM----LGSLTFSVDYNFPKKALVVTIQEAHGLPVMD-GQTQGSDPYI 197

  Fly   233 KVYLLPDKKKKFETKVHRKTLSPVFNETFTFKSLPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV 297
            |:.:||||:.:.:|:|.||||.|||:|||||..:||:...:..|.|.:..|||||:.|.||||.|
  Rat   198 KMTILPDKRHRVKTRVLRKTLDPVFDETFTFYGIPYSQLQDLVLHFLVLSFDRFSRDDVIGEVMV 262

  Fly   298 PLCTIDLAQ-TIEEWRDLVSVEGEGGQEKL--GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGG 359
            ||..:|.:. .::..||::.   ...|:.:  |::..||.|.|.|.::|||:|:|::|.|||:.|
  Rat   263 PLAGVDPSTGKVQLTRDIIK---RNIQKCISRGELQVSLSYQPVAQRMTVVVLKARHLPKMDITG 324

  Fly   360 LS-DPYVKIAIMQNGKRLKKKKTSIKKCTLNPYYNESFSFEVPFEQIQKICLVVTVVDYDRIGTS 423
            || :||||:.:....||:.||||.:|||||||.:||||.:::|.:.:..|.:...|:|:||...:
  Rat   325 LSGNPYVKVNVYYGRKRIAKKKTHVKKCTLNPIFNESFIYDIPTDLLPDISIEFLVIDFDRTTKN 389

  Fly   424 EPIGRCILGCMGTGTE-LRHWSDMLASPRRPIAQWHTLKD 462
            |.:||.|||.....|. ..||.::..|||:|:|:||:|.:
  Rat   390 EVVGRLILGAHSVTTSGAEHWREVCESPRKPVAKWHSLSE 429

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.